PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s837021g005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | C3H | ||||||||
Protein Properties | Length: 239aa MW: 27037.8 Da PI: 9.2138 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.3 | 4.1e-06 | 104 | 129 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y+++ C+ f+ C+yGd+C F+H+ PDK_30s837021g005 104 YRRRDCQKFYTVEGCPYGDKCIFIHD 129 899********99************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-5 | 57 | 92 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.2E-8 | 101 | 131 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-7 | 102 | 130 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.629 | 103 | 131 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.033 | 103 | 130 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.5E-6 | 161 | 183 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.54 | 164 | 183 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 26 | 164 | 185 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MEDDYHLWNG ESSSYTVSNA IQPQSRGWSE LPPNKKSRNS NGDSQGDWSG RSKDIGKMFF 60 KAKLCCRFRA GTWLYVKNCH FAYGIEELRK PPPNWEEIVA QRSYRRRDCQ KFYTVEGCPY 120 GDKCIFIHDE QLKALSSVVI SLSPMVGSGG YGGGANGSNW KPSNWKTRIC NKWEMVEYCP 180 FGSPEQAGVL SKIPIDTVVS PPRADMLLLG VPAQRSFGFF QSKGQRLIQN LKQLDKISM |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026662272.1 | 1e-116 | zinc finger CCCH domain-containing protein 56-like | ||||
Swissprot | Q84UQ3 | 1e-58 | C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56 | ||||
TrEMBL | A0A3Q0IA87 | 1e-114 | A0A3Q0IA87_PHODC; zinc finger CCCH domain-containing protein 56-like | ||||
STRING | XP_008799391.1 | 4e-75 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6615 | 38 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 2e-44 | C3H family protein |