PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s819171g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | C3H | ||||||||
Protein Properties | Length: 349aa MW: 40443.3 Da PI: 8.8026 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.4 | 1.9e-06 | 91 | 114 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k lC ff + G+C+ G +CkF+H+ PDK_30s819171g001 91 KSILCEFFKA-GQCQKGFKCKFSHD 114 6679**7777.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 6.7E-5 | 89 | 115 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.49E-6 | 89 | 114 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.272 | 89 | 116 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 91 | 115 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6 | 161 | 198 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.056 | 161 | 199 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF16543 | 1.4E-16 | 218 | 303 | IPR032378 | ZC3H15/TMA46 family, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MPPKRQTSKA EIAKKQKVVE DKTFGLKNKN KSKNVQKYVQ SLQQTVQPKP DPSKLAAKKK 60 KEEDKAREKE LNDLFKIAVS QPKVPVGVDP KSILCEFFKA GQCQKGFKCK FSHDLNVQRK 120 GEKIDLYSDK RDQPNETMDD WDQEMLEKVV ESKKKEYNQN KPTEIVCKYF LEAVEKKQYG 180 WFWVCPNGGT DCHYRHALPP GYVLKSQMKA LLEEETEKLS IEEEIENQRA KISSSTFLTP 240 ELFMQWKIKK MEEREAGLAA QRAERAKNDR MSGRELFLLD SSVFVDDAEA YEKYQSEESD 300 ASEQKLHICL SITYDTNVVY ASVSITRVRK KYLNLFAVDL AFCMINTAW |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008776070.1 | 0.0 | zinc finger CCCH domain-containing protein 11-like | ||||
Swissprot | Q0JHZ2 | 1e-171 | C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11 | ||||
TrEMBL | A0A2H3WZJ7 | 0.0 | A0A2H3WZJ7_PHODC; zinc finger CCCH domain-containing protein 11-like | ||||
STRING | XP_008776070.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8859 | 20 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20280.1 | 1e-146 | C3H family protein |
Publications ? help Back to Top | |||
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