PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s814491g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | G2-like | ||||||||
Protein Properties | Length: 392aa MW: 42719.6 Da PI: 6.9307 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.3 | 6.2e-32 | 227 | 280 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ PDK_30s814491g001 227 PRMRWTSTLHARFVHAVEFLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 280 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.97E-15 | 224 | 281 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-28 | 225 | 281 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.2E-24 | 227 | 280 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.8E-6 | 228 | 279 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009887 | Biological Process | organ morphogenesis | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MPSLDLSLNI SLPSPTPSST PDTDGDLSLD LLHQIEALKP QAEGCSNLLA CTHLSLSSSL 60 ATSEADGSWR WQGPLHDRCQ SSHLELVFDG SKPIKGIPIY NSSSTPFPSA DPEMGFNHQM 120 ISSPSSWPLF CSSVPSSPSS SCGYSTNLDT MTSFLHPAGL VPSMASSYHR IVAPPTRFTG 180 LSSDTIKYNQ HYNHHQQHGI GPLDVSQNMM RSRFMQKIPV KRSVRAPRMR WTSTLHARFV 240 HAVEFLGGHE RATPKSVLEL MDVKDLTLAH VKSHLQMYRT VKSTDKPAAS SEGSGEEDSA 300 LGTGNLSFRR LMEHKGSDGP IQLNDIDSNT RWSNSSSTGA WTQTNSSEME GLRPATFTSQ 360 TEGSHPCRTS GSTGSHQELK SPSLEFTLGR PD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-17 | 228 | 282 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-17 | 228 | 282 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-17 | 228 | 282 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-17 | 228 | 282 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-17 | 228 | 282 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-17 | 228 | 282 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-17 | 228 | 282 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-17 | 228 | 282 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017697926.1 | 0.0 | probable transcription factor RL9 | ||||
Swissprot | Q0J235 | 5e-57 | ROLL9_ORYSJ; Probable transcription factor RL9 | ||||
TrEMBL | A0A2H3ZP57 | 0.0 | A0A2H3ZP57_PHODC; probable transcription factor RL9 | ||||
STRING | XP_008798291.1 | 1e-178 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2558 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16560.1 | 5e-47 | G2-like family protein |