PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s808181g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family M-type_MADS
Protein Properties Length: 232aa    MW: 27065.6 Da    PI: 9.348
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s808181g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.53.6e-181151343
                       --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
             SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                       i n+s r  t+ kR++g++KK +ELS+LCd+++++i+++++
  PDK_30s808181g001 11 IVNDSARRATLKKRKKGLMKKVSELSTLCDVKACLIVYGPN 51
                       789************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.269151IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-23160IPR002100Transcription factor, MADS-box
CDDcd002663.87E-19285No hitNo description
PRINTSPR004046.6E-10323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.06E-24395IPR002100Transcription factor, MADS-box
PfamPF003195.2E-171151IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MARKKVKLEW IVNDSARRAT LKKRKKGLMK KVSELSTLCD VKACLIVYGP NEPQPEVWPS  60
APDAMRVLAR LKKMPEMEQS KKMMNQEGFM RQRIMKLQEQ LRKQDRENRE LETTLLMYQG  120
LAGKSLHTVS IEDMTSLAWL IEMKVNKVHE RIEHSKGEMA SKMVEGVKEE KKKVEGPSNI  180
KEKTPLEVAM EELQRQDWFT EIMNPHDLTI CGNEVVQPYI DHNNPWLDAY FP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLEWIVNDSARRATLKKRK
22125KKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008801454.11e-172agamous-like MADS-box protein AGL80
TrEMBLA0A2H3YNY21e-171A0A2H3YNY2_PHODC; agamous-like MADS-box protein AGL80
STRINGXP_008801454.11e-171(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-44AGAMOUS-like 80