PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s799341g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

C2H2

Protein Properties

Length: 390aa MW: 43648.8 Da PI: 6.0883

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s799341g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.8	4.4e-06	62	84	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C+++F ++ L++H+r+H PDK_30s799341g002 62 YFCQMCPRVFQTQQKLQVHQRSH 84 78********************9 PP
2	zf-C2H2	11.8	0.00073	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C k++ +Lk H + + PDK_30s799341g002 137 WRCDKCRKMYAVEADLKAHRKIC 159 58******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.55E-5	60	86	No hit	No description
SMART	SM00355	0.0032	62	84	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.99	62	85	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	64	84	IPR007087	Zinc finger, C2H2
SMART	SM00355	51	102	132	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	88	137	157	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MSRDDSTIVP PAQVPDEDVN RSHDSPENQQ RPRRRRNKPG NPDPRAKVIA LSPRELLAKA 60 DYFCQMCPRV FQTQQKLQVH QRSHSIPWIF QPSDRNDLKP VYVCPEPTCV HHNPLRALSD 120 ITGIKKHYYR KHCEPKWRCD KCRKMYAVEA DLKAHRKICS TYRREECDAH RQLQQCGTTR 180 EEMRSPNDSL NLLLWLSEEN PSSNHPGMVS GTDLISTPPV QHEEVATGAA ASDPSSSSFF 240 GGLLGSMNGQ QQNEFQSFAQ ETPYSSSSPS YFHQVINLTE QSQGNELQCF GPGLQFFGQD 300 PVVSSSFPFE IPNMETDYVA AISVGLSAPT EGQGRRMDPP IYSSGMVQPD QGGLMTVPFS 360 GPEVQPAALP PTPSPSPSQL DELERLVMED

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MSRDDSTIVP PAQVPDEDVN RSHDSPENQQ RPRRRRNKPG NPDPRAKVIA LSPRELLAKA  60
DYFCQMCPRV FQTQQKLQVH QRSHSIPWIF QPSDRNDLKP VYVCPEPTCV HHNPLRALSD  120
ITGIKKHYYR KHCEPKWRCD KCRKMYAVEA DLKAHRKICS TYRREECDAH RQLQQCGTTR  180
EEMRSPNDSL NLLLWLSEEN PSSNHPGMVS GTDLISTPPV QHEEVATGAA ASDPSSSSFF  240
GGLLGSMNGQ QQNEFQSFAQ ETPYSSSSPS YFHQVINLTE QSQGNELQCF GPGLQFFGQD  300
PVVSSSFPFE IPNMETDYVA AISVGLSAPT EGQGRRMDPP IYSSGMVQPD QGGLMTVPFS  360
GPEVQPAALP PTPSPSPSQL DELERLVMED

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008799261.1	0.0	protein indeterminate-domain 11-like
TrEMBL	A0A2H3YIT3	0.0	A0A2H3YIT3_PHODC; protein indeterminate-domain 11-like
STRING	XP_008799261.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14580.2	5e-46	C2H2-like zinc finger protein