PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s796801g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 324aa    MW: 35833.3 Da    PI: 8.2178
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s796801g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.8e-1659117146
                        TSSS-HHHHHHHHHHHHHTTTT..............-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..............tWktIartmgkgRtlkqcksrwqk 46 
                        rg+WT+eEd +l+ +   +G+g              +W+ Ia+ ++ gRt++++k++w++
  PDK_30s796801g002  59 RGPWTAEEDAKLLAYTSTHGTGnwtsvpkkaasfwcRWSIIANQLP-GRTDNDVKNHWNT 117
                        89********************************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.14120IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-4215IPR009057Homeodomain-like
SuperFamilySSF466891.75E-8343IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.3E-71642IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-2150127IPR009057Homeodomain-like
SuperFamilySSF466896.16E-1553129IPR009057Homeodomain-like
PROSITE profilePS5129419.34954123IPR017930Myb domain
SMARTSM007174.2E-1458121IPR001005SANT/Myb domain
PfamPF002498.2E-1459117IPR001005SANT/Myb domain
CDDcd001679.11E-1261119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
LKRCGKSCRL RWTNYLRPNL KHESFTPQEE ELIITLHATI GSRSEMGRPP CCDKLNVKRG  60
PWTAEEDAKL LAYTSTHGTG NWTSVPKKAA SFWCRWSIIA NQLPGRTDND VKNHWNTKLS  120
KKLIQKGIDP ITHRPISEII QSIGGLPTAA TAGTSRGKYH SLHGTRISCL NRDLKNVFLS  180
KSTAIIDPNF HESKPSTSSP LPQFYDVNSM TVATCASSSE ASSFSTVVTT QVNAPSLSPE  240
TKWSDFLVED AFLPHNDQGD VCAQSSMDDS SNQVQYAFLG RSPSWKAKMD VETQQKLMVG  300
SGVANQNDWV GEWYGALDGE LTLV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008804161.10.0transcription factor MYB35
TrEMBLA0A2H3YV940.0A0A2H3YV94_PHODC; transcription factor MYB35
STRINGXP_008804161.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118743439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.12e-34MYB family protein