PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s795761g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C3H
Protein Properties Length: 371aa    MW: 43396.1 Da    PI: 9.5387
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s795761g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.4e-07208231226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        +++ Cr + +  tC++G+ C+F+H 
  PDK_30s795761g001 208 REATCRQYEE-NTCNRGGYCNFMHL 231
                        6789**9999.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR018484.1E-6140155IPR009145U2 auxiliary factor small subunit
Gene3DG3DSA:3.30.70.3306.0E-11144203IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549286.38E-11144207IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010311206233IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-5208231IPR000571Zinc finger, CCCH-type
PRINTSPR018484.1E-6223235IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
AANPDVDFLD PKDIYGWTGP TMRSINFLTY YDTKTFFHKS VDASNQVHDS TYILKLMEEG  60
EILRLEVTRF ATNYVALDSL LASSKRSPLC ASYYLNLRFQ YNIAGIGVDD KLLIALHNVI  120
YKKSNREVAA LRLEEVIFSV KGWKDFYEDL FEELSKYGEI ESLNVCDNLA DHMFKEEEHA  180
ANALQNLTGR FYAGHPIIVD FSPVTDFREA TCRQYEENTC NRGGYCNFMH LKKMSRELRH  240
QLFGRYRRRH SRSRSRSQSP YRHRNHEDRY GGRGYGRHYD NRARYHEERS RRPRSQSPGR  300
RRGCSRSPAG RRNRSPVRES SAERRAKIEQ WNREREQADS SNKNNTANSD NNGYAQNGRQ  360
YHDQPQQNQG G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A2e-3114624876185Splicing factor U2AF 23 kDa subunit
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNecessary for the splicing of pre-mRNA. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008779329.31e-149splicing factor U2af small subunit B-like
RefseqXP_026657579.11e-149splicing factor U2af small subunit B-like
RefseqXP_026657580.11e-149splicing factor U2af small subunit B-like
SwissprotQ9ZQW81e-60U2AFA_ORYSJ; Splicing factor U2af small subunit A
TrEMBLA0A2H3X7591e-147A0A2H3X759_PHODC; splicing factor U2af small subunit B-like
STRINGXP_008779329.11e-148(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.12e-12C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Domon C,Lorković ZJ,Valcárcel J,Filipowicz W
    Multiple forms of the U2 small nuclear ribonucleoprotein auxiliary factor U2AF subunits expressed in higher plants.
    J. Biol. Chem., 1998. 273(51): p. 34603-10
    [PMID:9852132]