PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s793411g008
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HD-ZIP
Protein Properties Length: 288aa    MW: 32213.4 Da    PI: 4.4719
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s793411g008genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.51.5e-2072125356
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        k++++t+eq++ Le+ Fe ++++  e++ eLA+klgL+ rqV vWFqNrRa++k
  PDK_30s793411g008  72 KKRRLTPEQVHLLERSFEAENKLEPERKSELARKLGLQPRQVAVWFQNRRARWK 125
                        5678*************************************************9 PP
2HD-ZIP_I/II134.14.9e-4371162192
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                        ekkrrl+ eqv+lLE+sFe+e+kLeperK+elar+LglqprqvavWFqnrRAR+ktkqlE+d+++Lk++yd+l +++++L k++++Lr+++ 
  PDK_30s793411g008  71 EKKRRLTPEQVHLLERSFEAENKLEPERKSELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKSSYDSLLADHDSLLKDNDRLRSQVI 162
                        69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.84E-2066129IPR009057Homeodomain-like
PROSITE profilePS5007118.05867127IPR001356Homeobox domain
SMARTSM003894.7E-2070131IPR001356Homeobox domain
CDDcd000866.87E-2072128No hitNo description
PfamPF000468.1E-1872125IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.7E-2273134IPR009057Homeodomain-like
PRINTSPR000311.2E-698107IPR000047Helix-turn-helix motif
PROSITE patternPS000270102125IPR017970Homeobox, conserved site
PRINTSPR000311.2E-6107123IPR000047Helix-turn-helix motif
PfamPF021834.2E-18127169IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MDSGRLIFDS PSSHHGQMLF LGGGNPIFRV LIYNGLNVID GVYDLGSDEG ARSTSPDELL  60
EEEYYDEQLP EKKRRLTPEQ VHLLERSFEA ENKLEPERKS ELARKLGLQP RQVAVWFQNR  120
RARWKTKQLE RDFDRLKSSY DSLLADHDSL LKDNDRLRSQ VISLTEKLQA KELEAAGAAA  180
GLKPDDQAAS SADHAALNVH QLKSEDRLST GSRGSAVVDG DGPPHLVDSS GESFFPESYP  240
CVGPVDGSVQ SEEDDGSDEG CNYYPDGMFA EHRHPDEEAA QLDWWVWG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119127RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008781998.11e-170homeobox-leucine zipper protein HOX16 isoform X1
SwissprotQ6YWR42e-85HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16
TrEMBLA0A2H3XD951e-169A0A2H3XD95_PHODC; homeobox-leucine zipper protein HOX16 isoform X1
STRINGXP_008781998.11e-170(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26093887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.15e-70homeobox 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]