PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s789841g004

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

HB-other

Protein Properties

Length: 296aa MW: 33681.7 Da PI: 10.3598

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s789841g004	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	34.5	3.5e-11	20	60	13	53
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 + L ++F++n ps++ +e L+k+lg++ ++V+ WF+N R+ PDK_30s789841g004 20 KKLRQVFAENELPSRTVKENLSKQLGISSQKVSKWFKNARY 60 6899************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	1.9E-4	15	69	IPR001356	Homeobox domain
CDD	cd00086	3.99E-7	19	66	No hit	No description
SuperFamily	SSF46689	3.04E-9	20	71	IPR009057	Homeodomain-like
Pfam	PF00046	1.2E-8	20	60	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.9E-10	20	68	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.175	22	65	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MALDLNFLHE GDVGKCLNRK KLRQVFAENE LPSRTVKENL SKQLGISSQK VSKWFKNARY 60 AALKMRKAGI TKPHHVHSIT KRSRVSSGKA GSFDEVTSVD NSILLPLSSI IHVGRNLRKI 120 LQKKNKKSMN IPLRMHLKTA ANTESTKEFQ DLRTSLTETQ CPSISINRNL SKELGLPHGQ 180 VSTSFTNTMN LKQEVSGLRR KFTLGRTSRA EGCNVFQIDE MTESEQLYMA EIERLCSLQD 240 RLWNLKKALL SCKYNDFESV KTHSTEENVI YVPEAEEFGL DAIKTYSNSH QLLLKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008798087.1	0.0	pathogenesis-related homeodomain protein-like isoform X4
TrEMBL	A0A2H3YG09	0.0	A0A2H3YG09_PHODC; pathogenesis-related homeodomain protein-like isoform X4
STRING	XP_008798084.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8550	22	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.2	8e-14	pathogenesis related homeodomain protein A