PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s787781g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C3H
Protein Properties Length: 735aa    MW: 78960.1 Da    PI: 6.4077
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s787781g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.4e-07302322526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        +C++f++ G C++Gd C +aHg
  PDK_30s787781g002 302 PCPDFRK-GACRRGDMCEYAHG 322
                        8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.48E-1189161IPR020683Ankyrin repeat-containing domain
SMARTSM002480.3794124IPR002110Ankyrin repeat
PfamPF127961.0E-994160IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029712.46194163IPR020683Ankyrin repeat-containing domain
PRINTSPR014157.0E-595110IPR002110Ankyrin repeat
CDDcd002042.89E-1096160No hitNo description
Gene3DG3DSA:1.25.40.206.2E-1296160IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0044129160IPR002110Ankyrin repeat
PROSITE profilePS500889.057129163IPR002110Ankyrin repeat
PRINTSPR014157.0E-5147161IPR002110Ankyrin repeat
SMARTSM003564.0E-6297323IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-4301324IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-5302322IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582302324IPR000571Zinc finger, CCCH-type
SMARTSM0035662332355IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MCGGPERLKT SPFPSPFQSP FTSQDNINNS SSLPSFDMKH LTIETGDNFS SLLELAANND  60
ADGFKRSVDE EPSAVDEIGL WYGRKKGSNR MVLEPRTPLM VAATYGSIEV LRLILSLSSV  120
DVNRCCGPDK TTALHCAASS LANAVDAVKL LLSAGADANL LCEFKLALEE LLGGSGGDPR  180
CILRVSTSPS SSNSPPLSLS PVEGGSPSSD DSSASPTAGK FHEHPPVSPA AAASEKKEYP  240
VDPSLPDIKN SIYATDEFRM FSFKIRPCSR AYSHDWTECP FVHPGENARR RDPRKYHYSC  300
VPCPDFRKGA CRRGDMCEYA HGVFECWLHP AQYRTRLCKD GPSCTRRVCF FAHTNEELRP  360
LYVSTGSTVP SPRSSASAAM EMAAAMSLLQ GSPSSVSVMS PTPFTPTMSP SSNGGGHSSL  420
AWPQPNVPVL HLPGSNLQSS RLRTSLSARD MAVDELLMLS ELEPQQQQQQ QQQQLNDFYF  480
PSSPARLGSP LAGNRPGRPK TLVPSNLDDL FSAEISSSPR YNSDQGAVFS PTHKSAVFNQ  540
FQQQQQQQSL LSPIKTNGVF SPKAVDPQQA LLQASLGVAS SPGRMSPRGM EPVSPMSSRL  600
AALAQREKLQ QQLRSLGSSN SVPSMVGSPA NSSWSKWGSP SGKVDWGVNG DELGRYRSSS  660
SFELGGSTSG EEPDVSWVHS LVNPPELKDK HEANTSASNG GGAADASNSS TQMDGSDHAV  720
LGAWLEQMQL DQLVA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008786132.10.0zinc finger CCCH domain-containing protein 24-like
RefseqXP_008786133.10.0zinc finger CCCH domain-containing protein 24-like
RefseqXP_026659434.10.0zinc finger CCCH domain-containing protein 24-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2H3XMV70.0A0A2H3XMV7_PHODC; zinc finger CCCH domain-containing protein 24-like
STRINGXP_008786132.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-158CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]