PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s787431g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HD-ZIP
Protein Properties Length: 262aa    MW: 30525.3 Da    PI: 4.6649
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s787431g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.5e-194092456
                       -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                       ++++t++q++ Le+ Fe ++++  e++ +LA+ lgL+ rqV +WFqNrRa++k
  PDK_30s787431g001 40 KRRLTADQVQFLERTFELENKLEPETKVQLARDLGLKPRQVAIWFQNRRARWK 92
                       5689************************************************9 PP
2HD-ZIP_I/II130.18.9e-4239128291
        HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                        kkrrl+++qv++LE++Fe e+kLepe Kv+lar+Lgl+prqva+WFqnrRAR+ktkqlEkdyeaLk++ydal+++ + L ke+e+Lr+e+
  PDK_30s787431g001  39 KKRRLTADQVQFLERTFELENKLEPETKVQLARDLGLKPRQVAIWFQNRRARWKTKQLEKDYEALKSRYDALTADYDILLKEKEKLRTEV 128
                        9**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.85E-192996IPR009057Homeodomain-like
PROSITE profilePS5007116.8273494IPR001356Homeobox domain
SMARTSM003899.6E-183698IPR001356Homeobox domain
CDDcd000863.84E-163995No hitNo description
PfamPF000461.4E-163992IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.1E-2041101IPR009057Homeodomain-like
PRINTSPR000311.6E-56574IPR000047Helix-turn-helix motif
PROSITE patternPS0002706992IPR017970Homeobox, conserved site
PRINTSPR000311.6E-57490IPR000047Helix-turn-helix motif
PfamPF021838.4E-1794135IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MMNYEDVLGN RLEQPFWRPF ELEETGDEDL DEGVHQPVKK RRLTADQVQF LERTFELENK  60
LEPETKVQLA RDLGLKPRQV AIWFQNRRAR WKTKQLEKDY EALKSRYDAL TADYDILLKE  120
KEKLRTEVLS LTNMLLLKEK DIGSSEPFES NKFAHQLENL GSDSLCEMKR VNAQVTVCKQ  180
EDLSSANSTV LDSESPHYYI REGAHSTLMV PVDSSNIFQP DRSDLLHAGE VGEVKGCNFL  240
RLEDSLNNYG FPVEDQSYWF WP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18694RRARWKTKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008786730.20.0homeobox-leucine zipper protein HAT5-like
TrEMBLA0A2H3XP590.0A0A2H3XP59_PHODC; homeobox-leucine zipper protein HAT5-like
STRINGXP_008786730.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16055714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-43homeobox 1