PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s786001g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 199aa MW: 21898.8 Da PI: 6.3565 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 40.5 | 3.6e-13 | 12 | 48 | 14 | 50 |
HHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 14 skRrngilKKAeELSvLCdaevaviifsstgklyeys 50 kR++++ K A+ELS+LC++ +avi f+++gk +++ PDK_30s786001g002 12 RKRKETLKKAAYELSTLCGTPIAVICFAPNGKPDTWP 48 69*********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 5.36E-14 | 12 | 81 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-12 | 12 | 47 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 9.993 | 13 | 51 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MRKPETAFGH LRKRKETLKK AAYELSTLCG TPIAVICFAP NGKPDTWPED EGAVRDIVGR 60 HRSVGAEKRS KLHFDIPGYF AAQVRKTMCG QAWDPPPLDD IPEESLREMI SSLESAKEAV 120 KKQIQILKED SRCNQGDFLH GDDGREQQQG FPCNNPAFMA EFSNVPMVSK AAMDDGPGQG 180 HGAFVPMEAN ADLPRSSTA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008795554.1 | 1e-138 | agamous-like MADS-box protein AGL30 | ||||
TrEMBL | A0A2H3YAB8 | 1e-137 | A0A2H3YAB8_PHODC; agamous-like MADS-box protein AGL30 | ||||
STRING | XP_008795554.1 | 1e-138 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16694 | 4 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18650.1 | 3e-13 | AGAMOUS-like 103 |