PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s770411g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 463aa    MW: 51366.5 Da    PI: 6.5796
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s770411g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.76.3e-194692148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g WT eEd+ l++av+q+ g++Wk+Ia+ ++  Rt+ qc +rwqk+l
  PDK_30s770411g002 46 KGGWTDEEDDMLIKAVRQFNGKNWKKIAELFP-DRTDVQCLHRWQKVL 92
                       688*****************************.************986 PP
2Myb_DNA-binding353.3e-1198129132
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg 32 
                        +g WT+eEd l++++v+++G + W+ Ia+ ++
  PDK_30s770411g002  98 KGTWTKEEDNLIIQLVEKHGCKKWSVIAKSLP 129
                        799**************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.764196IPR017930Myb domain
SuperFamilySSF466896.22E-2344129IPR009057Homeodomain-like
SMARTSM007171.1E-164594IPR001005SANT/Myb domain
PfamPF002491.4E-164692IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2248105IPR009057Homeodomain-like
CDDcd001679.14E-154992No hitNo description
SMARTSM007170.01397147IPR001005SANT/Myb domain
PROSITE profilePS512949.76997149IPR017930Myb domain
PfamPF002495.1E-1098129IPR001005SANT/Myb domain
CDDcd001671.29E-8100129No hitNo description
Gene3DG3DSA:1.10.10.601.4E-11106130IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MVSEVKQEDE KGEGIQEAAP TSDIRSETKP MIIPGRTSGP TRRSTKGGWT DEEDDMLIKA  60
VRQFNGKNWK KIAELFPDRT DVQCLHRWQK VLNPELVKGT WTKEEDNLII QLVEKHGCKK  120
WSVIAKSLPE CPEADPLKRF ANGFISHDWK LNADRLVASN VGSGYRNTSP KNQCLELQST  180
SRGDSKCLRS GSIPILPEDS KHSSIELEPN TEDDSKHTTS GETDSKSSKR SQWNLSSSGE  240
LALGDMNKKN KDTSISSLPA CELTGSDRTA DINRILTTPL HCEDGNLGSS CYAPLQLMNV  300
DGCFSSEKLS ISNNHIQPTL SPIHCSTPDL SLSLACIPSS PESILRSAAK GFKKTPSIMR  360
KRGRNSSKPL LLEQLELETV DRKCPSGISN FQWRAENFKD DLESEYAHQI GSNNQVNFNR  420
SVCLNGDQLC SSHNFLKHED SAATKSVEKR LEGEFNAEYG LSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-2761296140MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-2761296140MYB PROTO-ONCOGENE PROTEIN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026662390.10.0transcription factor MYB3R-2-like
TrEMBLA0A3Q0IA030.0A0A3Q0IA03_PHODC; transcription factor MYB3R-2-like
STRINGXP_008796801.11e-157(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2944824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.22e-45myb domain protein 3r-4