PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s768851g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 259aa MW: 29759.9 Da PI: 4.6672 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.5 | 1.1e-18 | 40 | 92 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ +q+e Le+ F+ ++++ e++ +LAk lgL+ rqV +WFqNrRa++k PDK_30s768851g001 40 KRRLMVDQVELLEKNFALDNKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 92 4567789*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 125.9 | 1.8e-40 | 39 | 128 | 2 | 91 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kkrrl +qv+lLE++F ++kLeperK +la++Lglqprqva+WFqnrRAR+ktkq+Ekdy aLk++yd lk++ e+L ke+e+L++e+ PDK_30s768851g001 39 KKRRLMVDQVELLEKNFALDNKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQMEKDYGALKSSYDVLKADFEKLLKEKEKLKAEV 128 9**************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00018 | 0 | 21 | 33 | IPR018247 | EF-Hand 1, calcium-binding site |
SuperFamily | SSF46689 | 2.69E-18 | 26 | 96 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.795 | 34 | 94 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-16 | 38 | 98 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.10E-16 | 39 | 95 | No hit | No description |
Pfam | PF00046 | 5.6E-16 | 40 | 92 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-19 | 44 | 101 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 9.5E-6 | 65 | 74 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 69 | 92 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 9.5E-6 | 74 | 90 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.0E-15 | 94 | 134 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MMNIENVRGI TNEGSFYRSL DLDETGEVNL EEFCRQPDKK RRLMVDQVEL LEKNFALDNK 60 LEPERKIQLA KDLGLQPRQV AIWFQNRRAR WKTKQMEKDY GALKSSYDVL KADFEKLLKE 120 KEKLKAEVLF LTDNLCKGEK GDLETHEIKN PPLLLEKLDM ASVFEEKKPD MHVLLCKPED 180 LSSANSTVSD SDSPGCTDGV LSPLMGQAGS SNVFKPDRAV LLHVDEDEEI KGCSSMKLED 240 NSCNYVFPVE DQAFWFWPY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 86 | 94 | RRARWKTKQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008808495.1 | 0.0 | homeobox-leucine zipper protein HAT5-like isoform X1 | ||||
TrEMBL | A0A2H3Z4V0 | 0.0 | A0A2H3Z4V0_PHODC; homeobox-leucine zipper protein HAT5-like isoform X1 | ||||
STRING | XP_008808495.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16055 | 7 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 1e-34 | homeobox protein 16 |