PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s766431g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

FAR1

Protein Properties

Length: 813aa MW: 93644.4 Da PI: 6.8912

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s766431g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.1	2.5e-22	70	160	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn+YA+++GF +++++s +s ++g++ k tf+C kegkr +++++ ++ r r + rt+C+ak+kv+k++ dg +++t+++leHnH+++ PDK_30s766431g001 70 DFYNQYARHTGFGTKIRRSWYSLEDGQCNKVTFTCCKEGKRVYKNSERCSSYRLRLSARTDCQAKIKVQKRYaDGLFHLTEVVLEHNHPVN 160 6********************************************999************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.3E-19	70	161	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.9E-31	265	358	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.718	552	588	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.7E-6	558	585	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.6E-4	563	590	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 813 aa Download sequence Send to blast
MADESQDPTE VPPEKDVEVV SVGEPNAGKQ AGEPEYLPEP EPGGDQKTTG ADEGVPRVGM 60 VFKTFEEVYD FYNQYARHTG FGTKIRRSWY SLEDGQCNKV TFTCCKEGKR VYKNSERCSS 120 YRLRLSARTD CQAKIKVQKR YADGLFHLTE VVLEHNHPVN PAMSKYFRSH KDIYDGMKRQ 180 PVMRTKGQRE LATGENEDES SAGKARSSSF LGREDVEALQ QFLIQMQTIN ANFFHLMDFD 240 AEGRARNVFW ADGRSRAAYQ YFGDVIAFDT SYLTGNFETP LASFVGVNHH GHLVLLGCAL 300 LSNRSSATYR WLFKAWLSCM SGVPPNAIIT DHCKAIQEAV VEVFPGARHR LCLWHIMKRM 360 QEYLGGHAEY KVIKGMMKKA VYDSLEIDEF EEVWKNMIEK YGLKEHEWLK SLYENRYCWV 420 PAFVKDAFWA GMSTTQHKES MTSFFDGYIY PKTSIKQFLC KYETAIQSKY EKEIQADLDS 480 FSKSPQLISK FYMEDQLRKI YTVDMFKKFQ EEVKAILYCI PSLVRVDGPV STFEVKEPIQ 540 MKDGNMMENR NYEVIYNSQE QDLRCICCSF QFRGIICRHA LSVLNFLEMY EIPSQFILER 600 WRKDYKYIHI LSSSSNDSLA NGPMERYNNI YKFCLKFAEV GASIDDNYEV VMKILSEGME 660 ELIASDCLIS DPELRTYTMN GKRSLINEND EIHDQVQVRR KGQPLKKRKE SLVEKIVKTS 720 KKKVCQRKPT VGGQSDILRI APDAPQFDTP IWTQETISLT EQVNPTNLSI GSHFGVPVNH 780 QHALDNQSGM RWSFQQMFQQ AHTQETPPGP WAG

Sequence ? help Back to Top

Protein Sequence Length: 813 aa Download sequence Send to blast

MADESQDPTE VPPEKDVEVV SVGEPNAGKQ AGEPEYLPEP EPGGDQKTTG ADEGVPRVGM  60
VFKTFEEVYD FYNQYARHTG FGTKIRRSWY SLEDGQCNKV TFTCCKEGKR VYKNSERCSS  120
YRLRLSARTD CQAKIKVQKR YADGLFHLTE VVLEHNHPVN PAMSKYFRSH KDIYDGMKRQ  180
PVMRTKGQRE LATGENEDES SAGKARSSSF LGREDVEALQ QFLIQMQTIN ANFFHLMDFD  240
AEGRARNVFW ADGRSRAAYQ YFGDVIAFDT SYLTGNFETP LASFVGVNHH GHLVLLGCAL  300
LSNRSSATYR WLFKAWLSCM SGVPPNAIIT DHCKAIQEAV VEVFPGARHR LCLWHIMKRM  360
QEYLGGHAEY KVIKGMMKKA VYDSLEIDEF EEVWKNMIEK YGLKEHEWLK SLYENRYCWV  420
PAFVKDAFWA GMSTTQHKES MTSFFDGYIY PKTSIKQFLC KYETAIQSKY EKEIQADLDS  480
FSKSPQLISK FYMEDQLRKI YTVDMFKKFQ EEVKAILYCI PSLVRVDGPV STFEVKEPIQ  540
MKDGNMMENR NYEVIYNSQE QDLRCICCSF QFRGIICRHA LSVLNFLEMY EIPSQFILER  600
WRKDYKYIHI LSSSSNDSLA NGPMERYNNI YKFCLKFAEV GASIDDNYEV VMKILSEGME  660
ELIASDCLIS DPELRTYTMN GKRSLINEND EIHDQVQVRR KGQPLKKRKE SLVEKIVKTS  720
KKKVCQRKPT VGGQSDILRI APDAPQFDTP IWTQETISLT EQVNPTNLSI GSHFGVPVNH  780
QHALDNQSGM RWSFQQMFQQ AHTQETPPGP WAG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010925293.1	0.0	protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A2I0B6L0	0.0	A0A2I0B6L0_9ASPA; Protein FAR1-like sequence 6
STRING	XP_008785831.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-144	FAR1-related sequence 6