PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s743451g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family B3
Protein Properties Length: 257aa    MW: 28590.1 Da    PI: 10.2969
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s743451g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.23.4e-191532341499
                        T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        + l++p   ++e+g+   +++ ++l+d+ g sW v +  +++ gr vl++GW++F k n L+egD++vF+++++ +   +v++fr+
  PDK_30s743451g003 153 RFLTIPMALVREYGLT--GKQLVILRDPLGSSWPVSIASWRS-GRLVLATGWSDFYKGNCLQEGDVCVFEFVQNGSL-IHVHIFRA 234
                        5689*********988..6669***************88877.5899************************997665.8****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508636.569899IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-128101IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-158101IPR015300DNA-binding pseudobarrel domain
CDDcd100171.78E-91096No hitNo description
SMARTSM010190.00631199IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-23139235IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-23140235IPR015300DNA-binding pseudobarrel domain
CDDcd100173.79E-19140233No hitNo description
PROSITE profilePS5086314.508140235IPR003340B3 DNA binding domain
SMARTSM010193.9E-17141235IPR003340B3 DNA binding domain
PfamPF023622.4E-17151234IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGKAFRDRAS FFKVMMGDFK TNLRIPTPFK KRLRGKLRSK SVLRSARGGL WHVAVGGSDG  60
DGWFFQRAFV VDHAVAVGDF LVFVFDGDIG FDVKIYGKNG CEKEAVVSPK KDPSETLVQC  120
LPANRSSGPS TTTVERRKQF IFGKTSSECY LIRFLTIPMA LVREYGLTGK QLVILRDPLG  180
SSWPVSIASW RSGRLVLATG WSDFYKGNCL QEGDVCVFEF VQNGSLIHVH IFRAKEVTSQ  240
VDEKPGNKLL NLVIAIS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008792612.11e-165putative B3 domain-containing protein Os03g0621600
TrEMBLA0A2H3Y2Y31e-164A0A2H3Y2Y3_PHODC; putative B3 domain-containing protein Os03g0621600
STRINGXP_008792612.11e-165(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3747333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.13e-21B3 family protein