PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s733332g003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | bHLH | ||||||||
Protein Properties | Length: 156aa MW: 17228.7 Da PI: 8.8655 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.8 | 0.00047 | 81 | 104 | 32 | 55 |
..TTS-STCHHHHHHHHHHHHHHH CS HLH 32 kapskKlsKaeiLekAveYIksLq 55 +++ ++++ +++LekA+ Y+k Lq PDK_30s733332g003 81 QNRRERVDVVTMLEKAISYVKFLQ 104 4477889999*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 9.3E-4 | 90 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MGAAAGDGHQ ESAKQEKGIQ ECPYMGGELQ ASKKHCCSTW KTKAKPSPSK DPQSIAAKAA 60 VQGAFHPNSW RFPLIDDFML QNRRERVDVV TMLEKAISYV KFLQLQVKVI IQTELRMVLA 120 TDEFWPVQGG KAPEVSQVKE AIDAILSSHR NSNSSS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026658361.1 | 5e-67 | putative transcription factor bHLH086 | ||||
Swissprot | Q9C707 | 2e-29 | BH083_ARATH; Transcription factor bHLH83 | ||||
TrEMBL | A0A3Q0HUV8 | 1e-65 | A0A3Q0HUV8_PHODC; putative transcription factor bHLH086 | ||||
STRING | XP_008782563.1 | 3e-76 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1412 | 38 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66470.1 | 1e-29 | ROOT HAIR DEFECTIVE6 |