PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s729341g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 336aa    MW: 36916.9 Da    PI: 5.9708
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s729341g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.3e-1978128155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        ++y+GVr++  +g+WvAeIr+ps    r  r +lg+f ta eAa a+++a+++++g
  PDK_30s729341g002  78 CKYRGVRQRT-WGKWVAEIREPS----RgSRLWLGTFPTAVEAALAYDEAARAMYG 128
                        79*****999.**********84....36************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.27E-3278137No hitNo description
PfamPF008472.2E-1378128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3079137IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2179136IPR016177DNA-binding domain
PROSITE profilePS5103221.52279136IPR001471AP2/ERF domain
SMARTSM003801.7E-3579142IPR001471AP2/ERF domain
PRINTSPR003678.1E-108091IPR001471AP2/ERF domain
PRINTSPR003678.1E-10102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEMRGRKTRK GGGGWRKRRA RRCRNGPNSV SETIAWWKEH NHKLECASDG HKHIQRAPGK  60
GSRKGCMEGK GGPDNPHCKY RGVRQRTWGK WVAEIREPSR GSRLWLGTFP TAVEAALAYD  120
EAARAMYGSY ARLNLPEFNS CANTPITTSE SCESTTTSHH SNVSDVSNPR QPIVIMPRQE  180
PEDEIRNNGL PPAAAAAVAK DEPGEELFGP LDQIEDLPED RFDIGDMLRA MDADLTNRGA  240
GGEGINGIAC QSGPVVGDIN WQCSSPSAFS FQLQNPDAKM LGSLHHMEQN PAGMDCGYDD  300
FVRQMEHGLP DDSAMPELGF SDSSFFYNGH EEGGGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-1780136663ATERF1
3gcc_A8e-1780136663ATERF1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008776283.10.0dehydration-responsive element-binding protein 2B-like isoform X1
TrEMBLA0A2H3X0150.0A0A2H3X015_PHODC; dehydration-responsive element-binding protein 2B-like isoform X1
STRINGXP_008776283.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73153551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.18e-35ERF family protein