PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s728851g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C3H
Protein Properties Length: 1091aa    MW: 121986 Da    PI: 8.7098
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s728851g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.22.8e-08228248425
                        ---SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                        ++Cr+fa+ G C++G++Ck+ H
  PDK_30s728851g001 228 PPCRDFAA-GRCRRGSQCKYLH 248
                        79******.************* PP
2zf-CCCH17.57.4e-06322345226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         te+C +f + G C++G++C++ H 
  PDK_30s728851g001 322 STERCYDFTK-GRCHRGSSCRYVHH 345
                        59********.*************7 PP
3zf-CCCH25.32.6e-08386405525
                        --SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                        +C++fa+ G C++G+ CkF+H
  PDK_30s728851g001 386 PCKYFAE-GRCRRGEDCKFSH 405
                        8******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010316.22224251IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-6225250IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-5228248IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4229250IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-4319346IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.934320347IPR000571Zinc finger, CCCH-type
SMARTSM003560.027320346IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-4381407IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.671381408IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6384406IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-5386405IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5386405IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1091 aa     Download sequence    Send to blast
MAENVRKRVS KWDVVAEPHV PVISRQDNSL PLIANDPRKE KVQSDRNSSN VYGEQFSRLA  60
EIKAEDSVHK DKSEADKKFT KWSEQANDNT KLSKDFSQRP PSPKHYDLEL HYKDGSNGSS  120
KSYWEPQHEY QTTVKVVNMN KETDGLVIAQ DRGYSSSMSP GLDLWRQHSR SISPRAGWWR  180
SRRYIELYRS RSRSRSRSRS RSRSPCGLNR GPERWADRGR TGAGKSAPPC RDFAAGRCRR  240
GSQCKYLHED GGRRHSGRKY ETDLREDRYE KRRYSGHDNR EKNYADSREQ SDYTQNKLSQ  300
RHGSHYDEGD CVKPELHKSN KSTERCYDFT KGRCHRGSSC RYVHHEVSSH GGWSMRDEAR  360
EMTYDRRDSN ASLGQRIESR RVSDTPCKYF AEGRCRRGED CKFSHQGGTH GHLEGRPGDD  420
SLIYNLGTGD GLRSIISNCS DQTTAINLTN SSQWISNDGA GIAPPQSIDR VDSGQKPQHP  480
QSQNPEGSNC QIVEHEASQK ASTSQEEKIT EENSGQYQIP TVSALQTADR TYNIKNDMFS  540
CEKNGTMVAN NARPNAEMNS ASNLSTVVSI AGQSFSQDGQ SQYMGPQSFH AQSFTPNVQF  600
QQTVPPLNFS GQLQQLYPMT SNGQSQFIVP PALLNTQNFN YPMTSNGQSQ FIVPPALLNT  660
QNFKLGMQNQ PVHLGQNKPN YSPGGQIQQN LNLPPPQTGQ SRQNFQIVQS LPPPQSGQSQ  720
QNFNLGGQIQ YIVPPFNGLN QQNNSLSGQS HQSLPPPQNG PSNQNIHLLV PDGQNQYATP  780
EPPNTVSFKS DEKSLQTSSE NTGREQINQK TDESEKKPLP LCSDTPVAHK VVTSDLAARI  840
TDLSASLAQY FHNSGLQPSQ LFPPSSVTPP APPVAPFLHP SEGSWTQKPH VPTSDSMQPI  900
KSETGNLPPG FSSNSTEQKD PRMVETQTQT HLKSMIPVSI IDGTDGNPSK GVNLEEKQHH  960
GDDNPMQADL SGDTASKKVN EIETGQIKKE QAAHSEDLDA DMRTDGESKR SKEMKGIRLF  1020
KCALVEYVKD ILKPTWKEGH LSKEAHKTIV KKVVEKVTGA MQGPNIPQTQ EKIDLYLLHS  1080
KTKLNRLVQV T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192202RSRSRSRSRSR
2194202RSRSRSRSR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026665749.10.0zinc finger CCCH domain-containing protein 55-like isoform X1
RefseqXP_026665750.10.0zinc finger CCCH domain-containing protein 55-like isoform X1
RefseqXP_026665751.10.0zinc finger CCCH domain-containing protein 55-like isoform X1
RefseqXP_026665752.10.0zinc finger CCCH domain-containing protein 55-like isoform X1
RefseqXP_026665753.10.0zinc finger CCCH domain-containing protein 55-like isoform X1
TrEMBLA0A3Q0IFH40.0A0A3Q0IFH4_PHODC; zinc finger CCCH domain-containing protein 55-like isoform X1
STRINGXP_008809119.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77663443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-12C3H family protein