PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s722581g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

FAR1

Protein Properties

Length: 814aa MW: 92111.7 Da PI: 5.6783

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s722581g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	43.1	1.4e-13	239	320	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YA ++GF +++ +s + ++g++ + C++ gk + +++k + +t+C+a++ + +kdg +v+k ++HnH+l+p PDK_30s722581g001 239 RFYDQYACRTGFGIKILHSMYY-KDGRCRYLMLSCNRDGKVNYKSEK--------VAPKTNCNARFGLVCHKDGLLHVKKAINDHNHPLTP 320 5***************9998.7888**********998777........999****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-10	239	320	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.1E-34	425	518	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 814 aa Download sequence Send to blast
MSSNFVEIRQ GMDMAAGGVL AVHISPSKIN QVLLYFSLQE TLDGSSMGEP LDHNLDLVPV 60 SGSSIAGEEW EPHAEKVHEP IVRGGQNFIN EKIQESIVGE GLGPVAKRGQ QPHAENVPVC 120 VSGSSIAREG WKPNAEKVQE PIVRGGQNFI NEKGKDCIVG EGPEPVAKRG QEPLDKNVLE 180 PAAEEEQEPI TENEHEFAAG NQPESVAEKE QEIAQETILG DDSTPRVGMT FKSPEEAFRF 240 YDQYACRTGF GIKILHSMYY KDGRCRYLML SCNRDGKVNY KSEKVAPKTN CNARFGLVCH 300 KDGLLHVKKA INDHNHPLTP GTAHSHPSKK RKQYLGDIDG DRMLSDKLCQ EHGSTKSRKQ 360 GAGDNKCKLR LVEGDGEALC QFFVVMQTKN SCFFHSIYLD EEGCLKNVFW ADGRSRIAYR 420 YFGDVVLFDS TFLISKFDLP LVSIVGVNHH GQLVLLGCAL LSDETSETYT WLFKTWLSCM 480 LGQTPTAIIT DRNRAIQQAV AKVFPRARHR QCMWHILKRH PENLQGCVQY KEIKKTFKKV 540 VYNSLTANEF EEDWRKMVEK YGLGDNEWIK LLYEDRHCWA PVFVKDTFWA GMSVTLRGES 600 MNSFFQEYID CKTSLQQFLS EYEIYMEQQL CKVYTIDMFK KFQEEIKALV YCVSSLIKVD 660 GRISIFEVQE HVVVDGTMEC HEIFRNRCLK LAEIGMMLDE KHEFAAKVVN EAIQKLLSDD 720 STCEDTQPET LSLEATTNCD MVSFSANDNR DVGNENHGIH DPLQDTQILE APSCSRPWIR 780 AVTEIMLIAY SCIISHFKMS NFDQFTTCIQ GVPE

Sequence ? help Back to Top

Protein Sequence Length: 814 aa Download sequence Send to blast

MSSNFVEIRQ GMDMAAGGVL AVHISPSKIN QVLLYFSLQE TLDGSSMGEP LDHNLDLVPV  60
SGSSIAGEEW EPHAEKVHEP IVRGGQNFIN EKIQESIVGE GLGPVAKRGQ QPHAENVPVC  120
VSGSSIAREG WKPNAEKVQE PIVRGGQNFI NEKGKDCIVG EGPEPVAKRG QEPLDKNVLE  180
PAAEEEQEPI TENEHEFAAG NQPESVAEKE QEIAQETILG DDSTPRVGMT FKSPEEAFRF  240
YDQYACRTGF GIKILHSMYY KDGRCRYLML SCNRDGKVNY KSEKVAPKTN CNARFGLVCH  300
KDGLLHVKKA INDHNHPLTP GTAHSHPSKK RKQYLGDIDG DRMLSDKLCQ EHGSTKSRKQ  360
GAGDNKCKLR LVEGDGEALC QFFVVMQTKN SCFFHSIYLD EEGCLKNVFW ADGRSRIAYR  420
YFGDVVLFDS TFLISKFDLP LVSIVGVNHH GQLVLLGCAL LSDETSETYT WLFKTWLSCM  480
LGQTPTAIIT DRNRAIQQAV AKVFPRARHR QCMWHILKRH PENLQGCVQY KEIKKTFKKV  540
VYNSLTANEF EEDWRKMVEK YGLGDNEWIK LLYEDRHCWA PVFVKDTFWA GMSVTLRGES  600
MNSFFQEYID CKTSLQQFLS EYEIYMEQQL CKVYTIDMFK KFQEEIKALV YCVSSLIKVD  660
GRISIFEVQE HVVVDGTMEC HEIFRNRCLK LAEIGMMLDE KHEFAAKVVN EAIQKLLSDD  720
STCEDTQPET LSLEATTNCD MVSFSANDNR DVGNENHGIH DPLQDTQILE APSCSRPWIR  780
AVTEIMLIAY SCIISHFKMS NFDQFTTCIQ GVPE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008786606.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_008786607.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_008786608.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_008786609.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_026659576.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
TrEMBL	A0A2H3XNV4	0.0	A0A2H3XNV4_PHODC; protein FAR1-RELATED SEQUENCE 6-like
STRING	XP_008786606.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-93	FAR1-related sequence 6