PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s720261g005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 210aa MW: 24505.4 Da PI: 4.6762 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.7 | 1.1e-19 | 30 | 83 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++f++eq++ Le+ Fe++ ++ +++ +LAk+lgL+ rqV +WFqN+Ra++k PDK_30s720261g005 30 KKRRFSEEQVKSLESIFESQAKLEPRKKLQLAKELGLQPRQVAIWFQNKRARWK 83 5679*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 122 | 2.9e-39 | 30 | 119 | 2 | 91 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kkrr+s+eqvk+LE+ Fe++ kLep++K +la+eLglqprqva+WFqn+RAR+k+kqlE++yeaLk++yd+l ++ e+L+ke++ L ++ PDK_30s720261g005 30 KKRRFSEEQVKSLESIFESQAKLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLEREYEALKANYDTLLSSVESLKKEKQILVKQS 119 9***********************************************************************************998775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.33E-19 | 13 | 87 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.896 | 25 | 85 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.8E-17 | 28 | 89 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.05E-15 | 30 | 86 | No hit | No description |
Pfam | PF00046 | 5.2E-17 | 30 | 83 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-19 | 31 | 92 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 7.1E-6 | 56 | 65 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 60 | 83 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.1E-6 | 65 | 81 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 8.3E-14 | 85 | 126 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009615 | Biological Process | response to virus | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
METEDYSAAE EAESSYISMD PLLAKSRSDK KRRFSEEQVK SLESIFESQA KLEPRKKLQL 60 AKELGLQPRQ VAIWFQNKRA RWKSKQLERE YEALKANYDT LLSSVESLKK EKQILVKQSQ 120 KLTELLKNPS EESNGKREED ARPCLLVYSG DEEKNLGFFN REEAEYLYMG EPESSYLTSI 180 EQPCDLNCSS SPEQRCTTPP EWWESWPLTE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00650 | PBM | Transfer from LOC_Os09g35910 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008810697.1 | 1e-149 | homeobox-leucine zipper protein ATHB-12-like | ||||
Swissprot | Q651Z5 | 4e-49 | HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6 | ||||
Swissprot | Q9XH35 | 4e-49 | HOX6_ORYSI; Homeobox-leucine zipper protein HOX6 | ||||
TrEMBL | A0A2H3ZA24 | 1e-148 | A0A2H3ZA24_PHODC; homeobox-leucine zipper protein ATHB-12-like | ||||
STRING | XP_008810697.1 | 1e-149 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7873 | 34 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61890.1 | 2e-47 | homeobox 12 |
Publications ? help Back to Top | |||
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