PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s718424g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | C2H2 | ||||||||
Protein Properties | Length: 194aa MW: 21226.8 Da PI: 5.2577 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.7 | 8.7e-05 | 62 | 84 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H PDK_30s718424g002 62 YTCTFCRREFRSAQALGGHMNVH 84 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.95E-6 | 59 | 88 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.9E-4 | 60 | 87 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0066 | 62 | 84 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.157 | 62 | 89 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.4E-5 | 62 | 85 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 64 | 84 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MAAELSLLSL NQLQKLAQQQ QQFNPRNWPG LRLGEADDSW EVRAFAGETS GATGTTWPPR 60 SYTCTFCRRE FRSAQALGGH MNVHRRDRAR LRQSPQGSDP SPPTTPSPPI TFPPPVPEFV 120 ASGRYCLLYP IRDTGTIFAP TSDSPSTLLF ITPYPGTGLI SPCPPTLDSG VNKDGGKDGD 180 AVDEELDLEL RLGW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 2e-13 | 57 | 84 | 2 | 29 | superman protein |
2l1o_A | 2e-13 | 57 | 84 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008796324.1 | 1e-139 | transcriptional regulator SUPERMAN-like | ||||
TrEMBL | A0A2H3YBV8 | 1e-138 | A0A2H3YBV8_PHODC; transcriptional regulator SUPERMAN-like | ||||
STRING | XP_008796324.1 | 1e-138 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11852 | 26 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17810.1 | 3e-27 | C2H2 family protein |