PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s711421g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | NAC | ||||||||
Protein Properties | Length: 295aa MW: 34242.7 Da PI: 8.5187 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.8 | 3.1e-51 | 21 | 148 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 pGfrFhPtdeelv +yL++kve+k+l++ e+ik++diyk++PwdLp +++++ekewyfF+ r +ky+++ r+nr+t+sg+Wkatg d++++ PDK_30s711421g002 21 LPGFRFHPTDEELVGFYLRRKVEKKHLRI-EIIKQIDIYKYDPWDLPISAAGGEKEWYFFCLRGRKYKNSIRPNRVTESGFWKATGIDRPIY 111 69***************************.89***************8888899************************************** PP NAM 94 sk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 s+ g +glkk+Lv+y+g+a kg+ktdW+mhe+rl PDK_30s711421g002 112 STgdAGDCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 148 *8666667***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-54 | 19 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.985 | 20 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-25 | 22 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MDKRSKGEQK TVLEEEEDVV LPGFRFHPTD EELVGFYLRR KVEKKHLRIE IIKQIDIYKY 60 DPWDLPISAA GGEKEWYFFC LRGRKYKNSI RPNRVTESGF WKATGIDRPI YSTGDAGDCI 120 GLKKSLVYYR GSAGKGTKTD WMMHEFRLPA SDKNDDNSPR IQEAEIWTIC RIFKRNVPYK 180 KYPQGCKVSA SKQMSTDSSS KTSSFESDTG NEYKCLGSSS ILQGDMKLIT SYYEEKNQIL 240 ASQWNPIVQA PLTTWHPNIP YPSTNEFFKD GNWDELGRIM EFMTDTSKTH FCRYT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-47 | 22 | 176 | 22 | 169 | NAC domain-containing protein 19 |
3swm_B | 1e-47 | 22 | 176 | 22 | 169 | NAC domain-containing protein 19 |
3swm_C | 1e-47 | 22 | 176 | 22 | 169 | NAC domain-containing protein 19 |
3swm_D | 1e-47 | 22 | 176 | 22 | 169 | NAC domain-containing protein 19 |
3swp_A | 1e-47 | 22 | 176 | 22 | 169 | NAC domain-containing protein 19 |
3swp_B | 1e-47 | 22 | 176 | 22 | 169 | NAC domain-containing protein 19 |
3swp_C | 1e-47 | 22 | 176 | 22 | 169 | NAC domain-containing protein 19 |
3swp_D | 1e-47 | 22 | 176 | 22 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008787325.1 | 0.0 | transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 5e-88 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A2H3XQN7 | 0.0 | A0A2H3XQN7_PHODC; transcription factor JUNGBRUNNEN 1-like | ||||
STRING | XP_008787325.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1191 | 38 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 6e-87 | NAC domain containing protein 42 |