PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s710711g004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | G2-like | ||||||||
Protein Properties | Length: 241aa MW: 25742.7 Da PI: 5.42 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 39.7 | 1.1e-12 | 141 | 166 | 31 | 56 |
G2-like 31 tilelmkvkgLtlehvkSHLQkYRla 56 +i+elmkv+gLt+++vkSHLQkYRl+ PDK_30s710711g004 141 AIRELMKVDGLTNDEVKSHLQKYRLH 166 699*********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.33E-5 | 133 | 169 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-12 | 139 | 169 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.6E-10 | 141 | 166 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MGSAAPELGL DLKLYAMKSV SSFLREEASA IQNGEGRMLW SDNYSDENKN NATDDEKRIA 60 EKRGGEADCE TSSLESRGRS GGGAFVPFKG LSALAENPMK EDKLAVALPD LSLLSPGITA 120 SRPVPAVTED HRGGGLISKV AIRELMKVDG LTNDEVKSHL QKYRLHTRRV PNASAATNSP 180 VVMMGGLWAP QEHYSTSKQS ASQSGSPQSP LQLAGAARTI SITAGDSCEE EDGKSESYSW 240 K |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008792589.1 | 1e-127 | myb family transcription factor EFM | ||||
TrEMBL | A0A2H3Y2T9 | 1e-126 | A0A2H3Y2T9_PHODC; myb family transcription factor EFM | ||||
STRING | XP_008792589.1 | 1e-127 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5582 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13300.1 | 6e-19 | G2-like family protein |