PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s701651g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

FAR1

Protein Properties

Length: 829aa MW: 94676.9 Da PI: 8.7313

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s701651g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.5	9.4e-18	74	157	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY++YA++vGF v++++s+ + ++g++ +++C k g++++e k r+r++ t+C ak++vk++ dg +++ +l+HnH+++ PDK_30s701651g002 74 KFYKRYARRVGFGVSVRRSSFT-KEGQCLYLELMCCKGGRKRPEPKY-----RKRTSATTNCPAKIRVKLWGDGLLHLELANLDHNHPVS 157 6***************9998.6677************9999.....99999****************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.1E-16	74	158	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.3E-30	279	372	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.951	570	602	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.1E-5	577	598	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.2E-4	577	604	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 829 aa Download sequence Send to blast
MEEPSARSKN PRRARLSRRD LNSKDLAGDG AVGGVGQAEG LENDESDGDS ATEGGYDGVP 60 EVGMVFKTHQ EVSKFYKRYA RRVGFGVSVR RSSFTKEGQC LYLELMCCKG GRKRPEPKYR 120 KRTSATTNCP AKIRVKLWGD GLLHLELANL DHNHPVSPSM ARFLSCYKQL EAAKKRGSEH 180 VNGDGALVQP EELSQFPVDR LRALEELLFS ESEHRSFVER GRLRLGEGDA EALRLFFTLM 240 QAKNSDFFNV IDLDEEGCVR NVFWADARSR AAYQYYNDVV ALDTTYVTNN YDLPLATFVG 300 VNHHGQPVLL GCSLLSDETT ETYVWLLKAW IACMSGHIPK ALISDHYKGI QSAVSEVLPG 360 IRHRLCSWQI IKKVPEKLGG FAEYRAISKA MQKAVYDSLT VDEFEEDWRR MIEIYGLQEN 420 EWQKSLYECR HTWAPVYLKD TFWAGMSPTQ RSETMNTFFD GYIDAKTSLK QFLCKYEMAL 480 QSKYEKEAQA DFETFHKRRP SVSKFYMEEQ LSKVYTLNMF KKFQDEIEAI MYCHASLVKS 540 DGPVSTFNVK ECIFLDDGKR TMNRNHGVLY NTEQKEVQCI CGSFQFRGIL CRHALSVFKL 600 QQVHEIPSQY ILDRWKKDFK RLHVMARSSN DVVANNRVDR YDYLSMRCLQ LVEVGVLSDK 660 YQLALKLMRE MEKFLLSDST HDDTQPKIKP HVPKTNKLNQ DINQSVGKIA APENGNEMRR 720 RGVNPQVFPT GSQFGVPMHH PQYIGHQAAM RPSIVYMFPG GFDPQTFGNG PMMPWIYQQM 780 FQAAQKPKDS LGPRAGRPTR KRKIYRGHKP VEATQEPKEP PAPAAPATG

Sequence ? help Back to Top

Protein Sequence Length: 829 aa Download sequence Send to blast

MEEPSARSKN PRRARLSRRD LNSKDLAGDG AVGGVGQAEG LENDESDGDS ATEGGYDGVP  60
EVGMVFKTHQ EVSKFYKRYA RRVGFGVSVR RSSFTKEGQC LYLELMCCKG GRKRPEPKYR  120
KRTSATTNCP AKIRVKLWGD GLLHLELANL DHNHPVSPSM ARFLSCYKQL EAAKKRGSEH  180
VNGDGALVQP EELSQFPVDR LRALEELLFS ESEHRSFVER GRLRLGEGDA EALRLFFTLM  240
QAKNSDFFNV IDLDEEGCVR NVFWADARSR AAYQYYNDVV ALDTTYVTNN YDLPLATFVG  300
VNHHGQPVLL GCSLLSDETT ETYVWLLKAW IACMSGHIPK ALISDHYKGI QSAVSEVLPG  360
IRHRLCSWQI IKKVPEKLGG FAEYRAISKA MQKAVYDSLT VDEFEEDWRR MIEIYGLQEN  420
EWQKSLYECR HTWAPVYLKD TFWAGMSPTQ RSETMNTFFD GYIDAKTSLK QFLCKYEMAL  480
QSKYEKEAQA DFETFHKRRP SVSKFYMEEQ LSKVYTLNMF KKFQDEIEAI MYCHASLVKS  540
DGPVSTFNVK ECIFLDDGKR TMNRNHGVLY NTEQKEVQCI CGSFQFRGIL CRHALSVFKL  600
QQVHEIPSQY ILDRWKKDFK RLHVMARSSN DVVANNRVDR YDYLSMRCLQ LVEVGVLSDK  660
YQLALKLMRE MEKFLLSDST HDDTQPKIKP HVPKTNKLNQ DINQSVGKIA APENGNEMRR  720
RGVNPQVFPT GSQFGVPMHH PQYIGHQAAM RPSIVYMFPG GFDPQTFGNG PMMPWIYQQM  780
FQAAQKPKDS LGPRAGRPTR KRKIYRGHKP VEATQEPKEP PAPAAPATG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008800885.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_008800891.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
TrEMBL	A0A2H3YMA0	0.0	A0A2H3YMA0_PHODC; protein FAR1-RELATED SEQUENCE 6-like
STRING	XP_008800885.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-136	FAR1-related sequence 6