PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s701391g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C3H
Protein Properties Length: 620aa    MW: 56466.1 Da    PI: 4.6119
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s701391g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.54.5e-13497522126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +kt++C+ +   G+C+yG++C+FaHg
  PDK_30s701391g001 497 WKTRICNKWEVAGYCPYGSKCHFAHG 522
                        8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.6E-16492526IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.4E-9494527IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-8496523IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.112496524IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-10497522IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MVKRSALDFS FIKCIHPHPV ARGDGAQRGA SDSSSAGGDG AQRGGSDSTS AGSSSAGGDG  60
AQRGASDSSS AGGDGAQRGA SDSSSAGGDG AQRGASDSSS AGGDGAQRGA SDSSSAGGDG  120
AQRGASDSSS AGGDGAQRGA SDSSSAGGDG AQRGASDSSS AGGDGAQRGA SDSTSAGGSS  180
AGGDGAQRGA SDSTSAGGSS AGGDGAQRGA SDSTSAGGSS AGGDGAQRGA SDSTSAGGSS  240
AGGDGAQRGA SDSTSAGGSS AGGDGAQRGA SDSTSAGGSS AGGDGAQRGA SDSTSAGGSS  300
AGGDGAQRGA SDSTSAGGSS AGGDGAQRGA SDSTSAGGSS AGGDGAQRGA SDSTSAGGSS  360
AGGDGAQRGA SDSTSAGGSS AGGDGAQRGA SDSTSAGGSS AGGDGAQRGA SDSTSAGGSS  420
AGGDGAQRGA SDSTSAGGSS AGGDGAQRGA SDSTSAGGSS AGGDGAQRGA SDSTSAGVGG  480
GGYDGGPNAS NQRPSSWKTR ICNKWEVAGY CPYGSKCHFA HGAAELHRYG GGLVEMEGRD  540
ASSVATDSNQ AGASTRAPAD TVVASMTSVP HADVYHRRGP SQRSTVVGQR QGLGQGQRVR  600
KSKWPDKIKG IYGDWIDESE
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66153853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.13e-32C3H family protein