PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s700322g006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | NAC | ||||||||
Protein Properties | Length: 337aa MW: 37993.5 Da PI: 7.0999 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 29.3 | 2.5e-09 | 15 | 40 | 1 | 26 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegk 26 lppGfrFhPtdee++++yL +k+ +k PDK_30s700322g006 15 LPPGFRFHPTDEEIITHYLSAKMGEK 40 79*******************99776 PP | |||||||
2 | NAM | 106.9 | 2.5e-33 | 36 | 113 | 52 | 129 |
NAM 52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 k +ekewyfF+++d+ky+tg+r nrat+ gyWkatgkdke+++ kg lvg+kktLvfy+grapkgekt+Wv+he+rle PDK_30s700322g006 36 KMGEKEWYFFCQKDRKYPTGTRINRATEYGYWKATGKDKEIYRGKGILVGMKKTLVFYRGRAPKGEKTNWVIHEFRLE 113 45789**********************************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 39.329 | 1 | 137 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.32E-49 | 12 | 138 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-26 | 16 | 112 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MGEVSVPAEE ECLDLPPGFR FHPTDEEIIT HYLSAKMGEK EWYFFCQKDR KYPTGTRINR 60 ATEYGYWKAT GKDKEIYRGK GILVGMKKTL VFYRGRAPKG EKTNWVIHEF RLEGRTQYHN 120 HHRTPRDGWV VCRVFHKNTG MKRSPIADLA RMNSFGDHTM DCLMDPSYFN SDNRPSSSFT 180 DGGHGASFRG ISMNNTLMPS SYSTMLGLED PQYKSLMANS FPSIDNQERT SVLFPQIPAQ 240 NPYFLPPGST NLGYLHQEQA IAEALSGANN GLKSTCKLEQ LSNSMASQDT GLSNDRNTTE 300 TSSAISKHEM SSYRSYEDPD GGAAAGPILD LDNLWKY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-38 | 13 | 143 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-38 | 13 | 143 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-38 | 13 | 143 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-38 | 13 | 143 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-38 | 13 | 143 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-38 | 13 | 143 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-38 | 13 | 143 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-38 | 13 | 143 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-38 | 13 | 143 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-38 | 13 | 143 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-38 | 13 | 143 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-38 | 13 | 143 | 18 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-38 | 13 | 143 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-38 | 13 | 143 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008792523.1 | 0.0 | NAC domain-containing protein 100-like | ||||
TrEMBL | A0A2H3Y2Q5 | 0.0 | A0A2H3Y2Q5_PHODC; NAC domain-containing protein 100-like | ||||
STRING | XP_008792523.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1862 | 38 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04060.1 | 2e-79 | NAC domain containing protein 46 |