PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s699491g008
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 322aa    MW: 35171.2 Da    PI: 5.8931
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s699491g008genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.9e-1962112155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        + y+GVr++  +g+WvAeIr p  ng   r +lg+f ta eAa a+++a+++++g
  PDK_30s699491g008  62 CNYRGVRQRT-WGKWVAEIRKP--NG-GSRLWLGTFNTALEAALAYDEAARAMYG 112
                        56*****999.**********8..33.5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.7E-1462112IPR001471AP2/ERF domain
CDDcd000183.35E-3062121No hitNo description
SuperFamilySSF541712.81E-2063120IPR016177DNA-binding domain
PROSITE profilePS5103221.04863120IPR001471AP2/ERF domain
SMARTSM003801.8E-3463126IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-3063121IPR001471AP2/ERF domain
PRINTSPR003678.2E-106475IPR001471AP2/ERF domain
PRINTSPR003678.2E-1086102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
TKRVRNLHGG THPVAEAVAK WRKLKWQPDC SNDGEKYIQR VPAKGSRKGC MRGKGGPENS  60
HCNYRGVRQR TWGKWVAEIR KPNGGSRLWL GTFNTALEAA LAYDEAARAM YGPRARLNLP  120
ECGTAAKDTT LAASECYESA PTTSQHSGVS GVEESEVKAP KLEAGAETRS ANPPESAVEA  180
VACMVKAEAD EELFNHLDRL QDLHQDMFGI GEMMGNADAD PSNSTSTPQS RKSQKDQLGG  240
VDVITDWHFG ETPSALSFQI QSPDVKRLGT WCHVEQCPAD MDYGYGFAGP RRQDLEIGVA  300
GDQGMPELEF PDLSLLPESP RL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1663120563ATERF1
3gcc_A1e-1663120563ATERF1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008792179.10.0dehydration-responsive element-binding protein 2B-like isoform X1
TrEMBLA0A2H3Y2D90.0A0A2H3Y2D9_PHODC; dehydration-responsive element-binding protein 2B-like isoform X1
STRINGXP_008792179.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73153551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.13e-37ERF family protein