PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s696511g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | ERF | ||||||||
Protein Properties | Length: 191aa MW: 21033.2 Da PI: 11.6412 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.1 | 5e-14 | 111 | 163 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+GVr +++ g+Wv+e+r+p g + r +l +f t+e+Aa a++ + l+ge PDK_30s696511g001 111 PVYRGVRKRSNGGKWVCEVREP--HG-KSRLWLSTFATPEMAAWAHDVTAIGLHGE 163 68****************9996..33.5********************99999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.2E-9 | 111 | 162 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-25 | 112 | 176 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.2E-17 | 112 | 171 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.361 | 112 | 170 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-25 | 112 | 171 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.71E-22 | 113 | 170 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MTARRVGQVW PTWRLTIVNS IKQGAEIGHP VSDGVPLWHT EVPCSSITVA ILLWTRKTTP 60 SSPTPPMISP RPSGVPIPSP SYATSSHAPS PSATVLKRRA GRMKFRETRH PVYRGVRKRS 120 NGGKWVCEVR EPHGKSRLWL STFATPEMAA WAHDVTAIGL HGESAKLNFP TPQTPCLEQA 180 QRHRTTSGVL P |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008777348.2 | 4e-47 | dehydration-responsive element-binding protein 1F-like | ||||
Swissprot | Q9FJ93 | 3e-32 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | A0A2H3X2K2 | 9e-46 | A0A2H3X2K2_PHODC; dehydration-responsive element-binding protein 1F-like | ||||
STRING | XP_008777348.1 | 2e-46 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 9e-33 | C-repeat-binding factor 4 |
Publications ? help Back to Top | |||
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