PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s694061g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 286aa    MW: 31434.7 Da    PI: 8.2187
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s694061g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-05259280323
                        ETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                        Cp+C+k F+++ +L+ H  + H
  PDK_30s694061g003 259 CPICSKGFRDPVLLVEHVERdH 280
                        *****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.06E-12457No hitNo description
Gene3DG3DSA:4.10.1110.109.4E-111052IPR000058Zinc finger, AN1-type
PROSITE profilePS510397.8611059IPR000058Zinc finger, AN1-type
PfamPF014282.9E-141351IPR000058Zinc finger, AN1-type
SMARTSM001541.2E-41352IPR000058Zinc finger, AN1-type
SuperFamilySSF1183102.75E-959143No hitNo description
Gene3DG3DSA:4.10.1110.106.4E-1191145IPR000058Zinc finger, AN1-type
PROSITE profilePS510398.11498146IPR000058Zinc finger, AN1-type
PfamPF014281.0E-8101141IPR000058Zinc finger, AN1-type
SMARTSM001540.068101142IPR000058Zinc finger, AN1-type
PROSITE profilePS501579.39220249IPR007087Zinc finger, C2H2
SMARTSM003550.23220243IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280222244IPR007087Zinc finger, C2H2
SMARTSM0035510257280IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280259280IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MGTPEFPDLG KHCSVEDCRQ IDFLPFTCDR CRKVFCLEHR SYTKHLCPNA NQQDVTVLVC  60
PLCAKGVHLV PDEDPNITWE SHVNLDCDPS NYQKTTKKKR CPIPGCKETL TFSNTIRCRD  120
CTKEHCLKHR FGPDHKCPGP KKPVSGFPFV GLLNRSQKRE SLSKNSSNGT SWWSSSLLTA  180
ASSLRASAEA GMQRLSNATT QALQKAKDGT SPGGSGALVE QCTQCPAKFS TISALIEHAE  240
KSHHRSTQPG CDRVTIDACP ICSKGFRDPV LLVEHVERDH GGSSIA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010937215.11e-177zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
RefseqXP_010937225.11e-177zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
RefseqXP_010937234.11e-177zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
RefseqXP_010937242.11e-177zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
SwissprotQ0D5B91e-148SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A2H3ZML81e-174A0A2H3ZML8_PHODC; LOW QUALITY PROTEIN: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
STRINGXP_008784866.11e-175(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47633342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-115C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]