PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s681041g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 317aa    MW: 35968.5 Da    PI: 7.2035
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s681041g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-173077148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+WT eEd ll+++++ +G g+W++ a++ g++Rt+k+c++rw++yl
  PDK_30s681041g002 30 RGPWTLEEDALLIHYIACHGEGRWNLLAKCSGLKRTGKSCRLRWLNYL 77
                       89********************************************97 PP
2Myb_DNA-binding513.3e-1683126146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg+ ++eE+ l+++++ ++G++ W++Ia++++ gRt++++k++w++
  PDK_30s681041g002  83 RGNLSPEEQFLILELHSKWGNR-WSRIAQHLP-GRTDNEIKNYWRT 126
                        7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.452577IPR017930Myb domain
SuperFamilySSF466899.73E-3127124IPR009057Homeodomain-like
SMARTSM007171.1E-142979IPR001005SANT/Myb domain
PfamPF002491.5E-153077IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-223184IPR009057Homeodomain-like
CDDcd001676.47E-123277No hitNo description
PROSITE profilePS5129424.54578132IPR017930Myb domain
SMARTSM007178.2E-1582130IPR001005SANT/Myb domain
PfamPF002494.5E-1583126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2385131IPR009057Homeodomain-like
CDDcd001675.73E-1287126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MYKSLLGGVI TMSEKRGSNK YEEDKMELRR GPWTLEEDAL LIHYIACHGE GRWNLLAKCS  60
GLKRTGKSCR LRWLNYLKPD VKRGNLSPEE QFLILELHSK WGNRWSRIAQ HLPGRTDNEI  120
KNYWRTRVQK QARQLKIDAN SSMFRDAVRC YWMPRLLENM GSSQSMPSLV DSNATTTAGM  180
MEQTPHGPPN QFSNPPMHRP FESCSSYEPP GSENHSPSTS SRSMALPQLP NLSEFSSGPP  240
DNYSGVSFNP FMTGHFVNNS YGLDAMDLDP VVSAAQLGFS VSDYTMADNN CVDNIGDALW  300
NMDELWYARK LNEWGGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-25271311104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008797802.10.0transcription factor MYB62-like
TrEMBLA0A2H3YEZ40.0A0A2H3YEZ4_PHODC; transcription factor MYB62-like
STRINGXP_008797802.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-80myb domain protein 62