 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
PDK_30s680531g004 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 276aa MW: 30259.5 Da PI: 10.4262 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PDK_30s680531g004 | genome | PDK | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 255.4 | 3.4e-78 | 71 | 276 | 96 | 301 |
GAGA_bind 96 pvgvqvlsgtksidslqq..lsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesade 185
++ + +s+tk+++s++ ++ + ++ + v++ e +++ +e ++ ++++k+ + ++++++ +k ++k++kk+++++ +k+ +++ +
PDK_30s680531g004 71 IPQRSFMSQTKNMNSSHAtpVNSEMIDAQGVPVAAEGAMQEGVLEAKPLKVRKKHPSTRKNNHTATKLLRQKEPKKQPSVPAEKKGNST--S 160
4455677888888887774333355555556666555555555555555555555555566677889999999***9999977777666..6 PP
GAGA_bind 186 rskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGy 277
+ k+ekk++d+ ++g +D s++PvPvCsCtG+++qCY+WG+GGWqS+CCt++iS yPLP+s+ r+gaR+agrKmS ga++klL +LaaeG+
PDK_30s680531g004 161 KGKREKKTQDIIVDGTMVDFSNVPVPVCSCTGVPHQCYRWGAGGWQSSCCTMSISEYPLPMSPSRPGARLAGRKMSIGAYRKLLHRLAAEGH 252
79****************************************************************************************** PP
GAGA_bind 278 dlsnpvDLkdhWAkHGtnkfvtir 301
dls +vDLkdhWA+HGtnkfvti+
PDK_30s680531g004 253 DLSYAVDLKDHWARHGTNKFVTIK 276
***********************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 276 aa
Download sequence Send
to blast |
MDGRGRLGTR IWEFSNHTGH AESVLKPVSG LSVPNSIGSG RQETSLRMSS YINRDSIAGE 60
CNSGAMDFSW IPQRSFMSQT KNMNSSHATP VNSEMIDAQG VPVAAEGAMQ EGVLEAKPLK 120
VRKKHPSTRK NNHTATKLLR QKEPKKQPSV PAEKKGNSTS KGKREKKTQD IIVDGTMVDF 180
SNVPVPVCSC TGVPHQCYRW GAGGWQSSCC TMSISEYPLP MSPSRPGARL AGRKMSIGAY 240
RKLLHRLAAE GHDLSYAVDL KDHWARHGTN KFVTIK
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
