PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s679881g010

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

HD-ZIP

Protein Properties

Length: 437aa MW: 49381 Da PI: 6.674

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s679881g010	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.5	3.6e-21	63	118	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k PDK_30s679881g010 63 KKRYHRHTAHQIQEMEALFKECPHPDDRQRLKLSHELGLKPRQVKFWFQNRRTQMK 118 688999***********************************************998 PP
2	START	92.6	7.8e-30	256	436	3	162
HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS START 3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdetla.... 77 a +aa++l++k a+ep+Wv+ ++ evl +e s+ +++ea r++++v m++ lv +ld + +W e ++ PDK_30s679881g010 256 AMTAADQLLRKCHANEPLWVRNG--STANEVLDLEEHSRMfpwpmdlkqlhgdFRTEATRDTALVVMNSIALVDAFLDAN-KWMELFPyivs 344 67899**************99..9999999999999989***********************************.******* PP EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS START 78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161 ka+t++vi++g g l+lm+aelq+lsplvp R+ +f Ry++q +++g+w+ivd vd + s+ +++pSg++i++++ng+ PDK_30s679881g010 345 KAKTVQVITPGisahgdGSLHLMQAELQFLSPLVPaREAYFFRYCQQnSEGGTWMIVDFPVDGFHDGH-GMSFPQYRRRPSGCVIQDLPNGY 435 ************************************************************9999.688888889************ PP E CS START 162 s 162 s PDK_30s679881g010 436 S 436 9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.56E-21	50	121	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-22	57	126	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.281	60	120	IPR001356	Homeobox domain
SMART	SM00389	2.0E-19	61	124	IPR001356	Homeobox domain
Pfam	PF00046	9.8E-19	63	118	IPR001356	Homeobox domain
CDD	cd00086	7.25E-18	65	121	No hit	No description
PROSITE pattern	PS00027	0	95	118	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	29.308	245	437	IPR002913	START domain
SuperFamily	SSF55961	2.88E-20	246	437	No hit	No description
CDD	cd08875	1.48E-82	249	436	No hit	No description
Pfam	PF01852	1.1E-23	255	436	IPR002913	START domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence Send to blast
MPSFHPFSSI VPKEEEEVMV MRRGGRKEEE MESGSGSGHV DGVSCGEEQD NEQQPAPPPA 60 KKKKRYHRHT AHQIQEMEAL FKECPHPDDR QRLKLSHELG LKPRQVKFWF QNRRTQMKAQ 120 QDRQGNVMLR AENESLRDEN FRLQAAIRNV ACPNCGGPAI LGEMSFDEQH LRIDLERVSC 180 IISRYGSRAV QPFGPAPSHL PSSLDLDMGI SSRHFNGHPI ASCTDRIPAP AISDGHQPFS 240 GILIMDHDKP LVLDLAMTAA DQLLRKCHAN EPLWVRNGST ANEVLDLEEH SRMFPWPMDL 300 KQLHGDFRTE ATRDTALVVM NSIALVDAFL DANKWMELFP YIVSKAKTVQ VITPGISAHG 360 DGSLHLMQAE LQFLSPLVPA REAYFFRYCQ QNSEGGTWMI VDFPVDGFHD GHGMSFPQYR 420 RRPSGCVIQD LPNGYSR

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence Send to blast

MPSFHPFSSI VPKEEEEVMV MRRGGRKEEE MESGSGSGHV DGVSCGEEQD NEQQPAPPPA  60
KKKKRYHRHT AHQIQEMEAL FKECPHPDDR QRLKLSHELG LKPRQVKFWF QNRRTQMKAQ  120
QDRQGNVMLR AENESLRDEN FRLQAAIRNV ACPNCGGPAI LGEMSFDEQH LRIDLERVSC  180
IISRYGSRAV QPFGPAPSHL PSSLDLDMGI SSRHFNGHPI ASCTDRIPAP AISDGHQPFS  240
GILIMDHDKP LVLDLAMTAA DQLLRKCHAN EPLWVRNGST ANEVLDLEEH SRMFPWPMDL  300
KQLHGDFRTE ATRDTALVVM NSIALVDAFL DANKWMELFP YIVSKAKTVQ VITPGISAHG  360
DGSLHLMQAE LQFLSPLVPA REAYFFRYCQ QNSEGGTWMI VDFPVDGFHD GHGMSFPQYR  420
RRPSGCVIQD LPNGYSR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008803567.1	0.0	homeobox-leucine zipper protein ROC3-like
Refseq	XP_008803568.1	0.0	homeobox-leucine zipper protein ROC3-like
Refseq	XP_026664243.1	0.0	homeobox-leucine zipper protein ROC3-like
Swissprot	A2ZAI7	1e-160	ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
Swissprot	Q336P2	1e-160	ROC3_ORYSJ; Homeobox-leucine zipper protein ROC3
TrEMBL	A0A2H3YTV6	0.0	A0A2H3YTV6_PHODC; homeobox-leucine zipper protein ROC3-like
STRING	XP_008803566.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7846	34	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46880.1	1e-130	homeobox-7

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]