PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s678801g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

C3H

Protein Properties

Length: 366aa MW: 42036.3 Da PI: 5.0778

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s678801g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.3	2.1e-06	91	114	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k lC ff + G+C+ G +CkF+H+ PDK_30s678801g001 91 KSILCEFFKA-GQCQKGFKCKFSHD 114 66797777.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	6.7E-5	89	115	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.272	89	116	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.89E-6	89	114	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-4	91	115	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.6	161	198	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.216	161	199	IPR000571	Zinc finger, CCCH-type
Pfam	PF16543	5.0E-19	218	303	IPR032378	ZC3H15/TMA46 family, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MPPKRQPSKA DLAKKQKVVE DKTFGLKNKN KSKNVQKYVQ SLHQSVQPKP DPSKIAAKKK 60 KEEEKARDKE LNDLFKIAVS QPKVPIGVDP KSILCEFFKA GQCQKGFKCK FSHDLNVQRK 120 GEKIDLYSDK RDQPDETMED WDQETLEKVV ESKKKEYNPN KPTEIVCKYF LEAVEKKQYG 180 WFWVCPNGGK DCHYRHALPP GYVLKSQMKA LLEEETEKIS IEEEIENQRA KVTASTPLTP 240 ELFMQWKKKK MDEREAGLAA RQAERAKNDR MSGRELFLLD SSVFVDDAEA YEKYQSEEES 300 DASEQKVENE DGPERPSTST SVDKDVEEVL ADDDDDELDI DELNELEASL SKTSIQIREP 360 GIVQSH

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MPPKRQPSKA DLAKKQKVVE DKTFGLKNKN KSKNVQKYVQ SLHQSVQPKP DPSKIAAKKK  60
KEEEKARDKE LNDLFKIAVS QPKVPIGVDP KSILCEFFKA GQCQKGFKCK FSHDLNVQRK  120
GEKIDLYSDK RDQPDETMED WDQETLEKVV ESKKKEYNPN KPTEIVCKYF LEAVEKKQYG  180
WFWVCPNGGK DCHYRHALPP GYVLKSQMKA LLEEETEKIS IEEEIENQRA KVTASTPLTP  240
ELFMQWKKKK MDEREAGLAA RQAERAKNDR MSGRELFLLD SSVFVDDAEA YEKYQSEEES  300
DASEQKVENE DGPERPSTST SVDKDVEEVL ADDDDDELDI DELNELEASL SKTSIQIREP  360
GIVQSH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008783661.1	0.0	zinc finger CCCH domain-containing protein 11-like isoform X1
Swissprot	Q0JHZ2	0.0	C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBL	A0A2H3XH16	0.0	A0A2H3XH16_PHODC; zinc finger CCCH domain-containing protein 11-like isoform X1
STRING	XP_008783661.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8859	20	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20280.1	1e-162	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]