PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s676151g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family M-type_MADS
Protein Properties Length: 263aa    MW: 29832.6 Da    PI: 8.7793
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s676151g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.82.5e-171156348
                       --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
             SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                       i n+  r  t+ kRr+g+lKK +ELS+LC++e++ i++++++++ e
  PDK_30s676151g001 11 IANDATRRATLKKRRKGLLKKVQELSILCGVEACAIVYGPNDRVPE 56
                       88999************************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.0E-23160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.787156IPR002100Transcription factor, MADS-box
CDDcd002665.90E-20285No hitNo description
PRINTSPR004045.2E-11323IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-23394IPR002100Transcription factor, MADS-box
PfamPF003191.6E-161154IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MARNKVKLAW IANDATRRAT LKKRRKGLLK KVQELSILCG VEACAIVYGP NDRVPEVWPT  60
PPEAARVIAR FKSMPEMEQT RKMVNQEGFL RQRAMKLLEQ LRKQERENRE IEMKLLIREG  120
LRGQSYDNLG IEEATCVSWM LERKIKEIYD KLDEISSKLA VQQAAAAAAP PPALPPQVMV  180
PPPTAPPPPY PPVAPTGPVV PMEKTPVEQA MEALQRQNWF VDMMSPWPED FYQASQPMDP  240
YQPPPPASVD HTSPWTDPSF PFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12125KKRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008807941.10.0agamous-like MADS-box protein AGL80
TrEMBLA0A2H3Z3H90.0A0A2H3Z3H9_PHODC; agamous-like MADS-box protein AGL80
STRINGXP_008807941.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.19e-37AGAMOUS-like 80