PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s671281g005
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family LBD
Protein Properties Length: 187aa    MW: 21089.3 Da    PI: 7.7127
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s671281g005genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260104.87.1e-33121271100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeer................edamsslvyeAearardPvyGa 76 
                        +CaaC++l rkC++dC+lapyfpa++p+kfa vhk+FGasnv+kll +l+++                  eda++s+vyeA ar+rdPvyG+
  PDK_30s671281g005  12 PCAACRTLHRKCSHDCMLAPYFPADEPEKFASVHKVFGASNVIKLLLRLRDSSFstttcashvmveegrrEDAVKSMVYEAYARLRDPVYGC 103
                        7*********************************************999666634567777888888888********************** PP

             DUF260  77 vgvilklqqqleqlkaelallkee 100
                        +  i+ lq+ +e l+ +l +++e+
  PDK_30s671281g005 104 TTAISYLQKCVEDLRGQLRTTREK 127
                        ***************999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.99811128IPR004883Lateral organ boundaries, LOB
PfamPF031954.3E-3412125IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MDSRLRARPD LPCAACRTLH RKCSHDCMLA PYFPADEPEK FASVHKVFGA SNVIKLLLRL  60
RDSSFSTTTC ASHVMVEEGR REDAVKSMVY EAYARLRDPV YGCTTAISYL QKCVEDLRGQ  120
LRTTREKVLE SQEQRDRLLR VLMDDPYLKP THLPAGGMVC GSGGSFMLDN MIHDGHCGTF  180
AESWPMI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-321212911112LOB family transfactor Ramosa2.1
5ly0_B4e-321212911112LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008781832.11e-122LOB domain-containing protein 25-like
RefseqXP_008781843.11e-122LOB domain-containing protein 25-like
TrEMBLA0A2H3XCN21e-121A0A2H3XCN2_PHODC; LOB domain-containing protein 25-like
STRINGXP_008781832.11e-121(Phoenix dactylifera)
STRINGXP_008781843.11e-121(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17783510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.18e-38LOB domain-containing protein 11