PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s660091g007
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 305aa    MW: 34989.3 Da    PI: 6.8843
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s660091g007genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.93.9e-53161431128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeelvv+yL+kkv+ ++l++  +i+evd+yk++Pw+Lp+k+  +++ewyfF++rd+ky++g+r+nra+ +gyWkatg dk+v
  PDK_30s660091g007  16 LPPGFRFHPTDEELVVHYLCKKVACQRLPV-PIIAEVDLYKYHPWELPEKALFGQREWYFFTPRDRKYPNGSRPNRAAGEGYWKATGADKPV 106
                        79****************************.88***************8878899************************************* PP

                NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        + k +++  g+kk Lvfy+g+ap+g+ktdW+mheyrl
  PDK_30s660091g007 107 TPKgGHRPLGIKKALVFYSGKAPRGVKTDWIMHEYRL 143
                        *9966677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-6412169IPR003441NAC domain
PROSITE profilePS5100560.88116169IPR003441NAC domain
PfamPF023656.5E-2717143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MTMGSRKRDA EAELNLPPGF RFHPTDEELV VHYLCKKVAC QRLPVPIIAE VDLYKYHPWE  60
LPEKALFGQR EWYFFTPRDR KYPNGSRPNR AAGEGYWKAT GADKPVTPKG GHRPLGIKKA  120
LVFYSGKAPR GVKTDWIMHE YRLADANRAA SKKGTLRLDD WVLCRLYNKK NTWEKMQQQK  180
EAASFGETMD SVDDTGSDSF RTPESDIDND VVFPDFDDMA RVGAYPPQAF NGMQGVRVNN  240
TTGYRPAIEQ RPKEENEWFT DLNLDDLHSS YMAFGSTPAL DMSNHDYYFS NLPQLRSNQS  300
DLLPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-9731751174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2674400.0DQ267440.1 Elaeis guineensis NAC protein 1 mRNA, complete cds.
GenBankDQ2674420.0DQ267442.1 Elaeis guineensis NAC protein 1 splice variant 2 mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008792531.10.0NAC domain-containing protein 68-like isoform X2
SwissprotQ52QH41e-118NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBLA0A2H3Y2X60.0A0A2H3Y2X6_PHODC; NAC domain-containing protein 68-like isoform X2
STRINGXP_008792530.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53893761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.15e-90NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Taga Y, et al.
    Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
    Plant Signal Behav, 2009. 4(8): p. 740-2
    [PMID:19820348]
  3. Xia N, et al.
    Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
    Mol. Biol. Rep., 2010. 37(8): p. 3703-12
    [PMID:20213512]
  4. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  5. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  6. Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
    IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
    Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
    [PMID:26766411]