PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s658861g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GeBP
Protein Properties Length: 202aa    MW: 22474.8 Da    PI: 9.8867
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s658861g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57365.61.1e-201643497
             DUF573 34 idafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97
                       +d++++ +++s++++vs++ql +KirrLKkKf++ v++ k+g +p fsk++++ +felskkiWg
  PDK_30s658861g003  1 MDQLHNLIRGSLQVEVSNNQLNDKIRRLKKKFETSVARGKNGADPIFSKPQERTVFELSKKIWG 64
                       789************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.6E-18164IPR007592Protein of unknown function DUF573
Gene3DG3DSA:1.10.10.109.2E-41479IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.2E-4137183IPR011991Winged helix-turn-helix DNA-binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MDQLHNLIRG SLQVEVSNNQ LNDKIRRLKK KFETSVARGK NGADPIFSKP QERTVFELSK  60
KIWGAKKFIS EDPRASSGEE EEGEESDSEM AGRQNVKEEN AASPAAALKL HDGVSPAVPL  120
ANGSAKLRYP FLSGAVTKMA NECKCGAAMK RALENLEDSK ARAMEEKVKK LKMGEMKTHM  180
RRMDLMKETV KHIFEALAKS DL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008805601.11e-147STOREKEEPER protein-like
TrEMBLA0A2H3YY651e-145A0A2H3YY65_PHODC; STOREKEEPER protein-like
STRINGXP_008805601.11e-146(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.13e-15DNA-binding storekeeper protein-related transcriptional regulator