PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s658671g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

HB-other

Protein Properties

Length: 271aa MW: 30466.3 Da PI: 9.6455

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s658671g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	44.7	2.2e-14	71	114	13	56
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 L ++F++n+yps+e+re+LA + g+t rq++ WF N R ++ PDK_30s658671g002 71 SKLHDYFNENQYPSRETRERLAVESGMTSRQISKWFENARHSMR 114 4699************************************8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	2.2E-10	56	120	IPR001356	Homeobox domain
CDD	cd00086	5.13E-13	60	114	No hit	No description
Pfam	PF00046	1.0E-11	71	114	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.2E-12	71	120	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-14	72	121	IPR009057	Homeodomain-like
PROSITE profile	PS50071	13.41	73	116	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	91	114	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MESREQSVYL DSETKNSSDV SSGDHGSSSQ GVEDMKPPFI RQCRMVFDSR MSSSLCMPYR 60 IVITEHELVE SKLHDYFNEN QYPSRETRER LAVESGMTSR QISKWFENAR HSMRVSAKEA 120 NHAVISTPDE GTSATEAKRN NDKPDKGRVK NYASSGSKGK KSVGERNDAI GAGHRSSSGI 180 KMEDTQENNR KKAIERELRK RRKSSCIYYV KIAAKTRTDS LFFLLGLYTL SSALRAFSAL 240 SVDQKALVAV GCMMCHVFVD QRALVVNWLV A

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008780923.1	4e-84	homeobox protein HOX1A isoform X1
Refseq	XP_017696778.1	4e-84	homeobox protein HOX1A isoform X1
Refseq	XP_026657923.1	6e-86	homeobox protein HAZ1 isoform X2
TrEMBL	A0A2H3XAP9	9e-83	A0A2H3XAP9_PHODC; homeobox protein HOX1A isoform X1
TrEMBL	A0A3Q0HTC3	1e-84	A0A3Q0HTC3_PHODC; homeobox protein HAZ1 isoform X2
STRING	XP_008780923.1	2e-83	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4393	37	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	2e-06	HB-other family protein