PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s657581g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family M-type_MADS
Protein Properties Length: 491aa    MW: 54286.2 Da    PI: 10.4585
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s657581g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF22.41.6e-071057250
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        i+ k+ r + fskRr+g++  A+ L v  +  +a++ifs+ g+++ +s
  PDK_30s657581g001 10 IIDKKTARDICFSKRRKGLFSEAKKL-VRAGSGIAILIFSKVGNVFSFS 57
                       5999**********************.89****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.273160IPR002100Transcription factor, MADS-box
SMARTSM004323.6E-11159IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-13273IPR002100Transcription factor, MADS-box
PfamPF003191.4E-81156IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MGRRKIPIEI IDKKTARDIC FSKRRKGLFS EAKKLVRAGS GIAILIFSKV GNVFSFSHPT  60
IQSIADRFLS VENSKDGSSD NDKFHGNADI VARGSDAASG GLTRSSGEVI FQILWKTIMI  120
VYIDGLKLLL CNIVVYLLFK KREGKLFSSK AEVREFQDFI ATNGLIDRSR WTTQPGTNSH  180
MMGMPPSMRV LDAENTALTT LIEATEVQEA TRKNALVIQR TLDDYCIAFR KKVNHTKSIV  240
CSSPKINPQL KSSIKQILRV DVSNGSEASS GGVATASSFW PGSAHHSHCP NPTTYEIDRF  300
QYLSLTVTNL SIYVKTCEFL HGAATCKNSE FSSRPSSSMK SLIRPVYQMI SPELMALAKR  360
AKEEFGSNDD MDTTLASSST SSSSSPMFER GRFYEVYSAR RNERLKRKKE IADELVSQDP  420
GIAIELAKRR NSKNVNSVRK SVPADFSSSR VNSLRSSVRS SKEMKKPSSL TCSEKPAAIG  480
KVIGARSARK V
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP782923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-15AGAMOUS-like 61