PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s6550994g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB_related | ||||||||
Protein Properties | Length: 207aa MW: 23029.1 Da PI: 9.4464 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.5 | 1.3e-12 | 37 | 81 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I + +g +t q++s+ qky PDK_30s6550994g001 37 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 81 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.5E-16 | 31 | 87 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.18 | 32 | 86 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 7.5E-19 | 35 | 84 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 3.2E-6 | 35 | 87 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.5E-10 | 36 | 84 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-10 | 37 | 81 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.72E-8 | 39 | 82 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MRVEREIYQK GALFVMDMAE IGCRKKIRKP YTITKSRESW TEPEHDKFLE ALQLFDRDWK 60 KIEAFVGSKT VIQIRSHAQK YFLKVQKNGT SEHVPPPRPK RKAAQPYPQK ASKNASLQTS 120 SMLEPGYALT ADTSSMLRNS TTSATVSSWV HSSVQPVSAP HAPKDDVGPT GAVVANNCSC 180 SSTESPSITW ATCETTDQEN HVRSLCG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00625 | PBM | Transfer from PK02532.1 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026662433.1 | 1e-132 | protein REVEILLE 5-like isoform X2 | ||||
Refseq | XP_026662435.1 | 1e-132 | protein REVEILLE 6-like isoform X5 | ||||
Swissprot | Q8H0W3 | 1e-63 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | A0A3Q0I615 | 1e-131 | A0A3Q0I615_PHODC; protein REVEILLE 5-like isoform X2 | ||||
TrEMBL | A0A3Q0IA49 | 1e-131 | A0A3Q0IA49_PHODC; protein REVEILLE 6-like isoform X5 | ||||
STRING | XP_008796928.1 | 1e-131 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1096 | 38 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.2 | 4e-53 | MYB_related family protein |
Publications ? help Back to Top | |||
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