PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s65509416g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 465aa    MW: 50611.3 Da    PI: 4.9517
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s65509416g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.70.000123393711754
                          HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           ++   L++l+ +      +K + a++L +A+eYIk L
  PDK_30s65509416g003 339 GDRVTALQQLVSPF-----GKTDTASVLHEAIEYIKFL 371
                          55666677777776.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.865322371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.43E-5332375No hitNo description
SuperFamilySSF474592.75E-11332391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-8332382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MAEEFQTGIC NSGSWWSTGR TGGFDGPVMS TSVSCSTEFT WAAGADDMVQ AKSRSYDESP  60
GSVSNSSITF QDTHKPQASD QLVANPIMDS TLQVSDFGLS SPLISSNQPF LMAGERAENN  120
LHALLQEDMS SGSYLRNEPV MESNQIHMNV ESSSLNLIED LKQGLMQDQH HLSSSANSCP  180
LFPASFGLPP ALLQGLFEPE TRPRQSFNNQ TMNSPMSYHG VLYESSQSQV AKLPQFDKAL  240
PVKQQLHLSN NTPFWNPSAT ATTETSLGLY SSTPTGLALH ALEGETNRSN LLVQSNSEGA  300
GESRSNTMKK SSNEPALKKP RMETPSPLPT FKVRKEKLGD RVTALQQLVS PFGKTDTASV  360
LHEAIEYIKF LHEQVGVLSA PYLKNGHQMQ HPQNFDETND GEGPQIDLTS RGLCLVPISS  420
TFAVASETPV DFWTPTFGGT YSVVSKDKKK ERSSISAVSL QDMGD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017698975.20.0transcription factor bHLH112
TrEMBLA0A2H3ZRD50.0A0A2H3ZRD5_PHODC; transcription factor bHLH112
STRINGXP_008810246.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.11e-52bHLH family protein