PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s655093g008
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 435aa    MW: 47306.6 Da    PI: 8.5492
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s655093g008genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00034124143221
                        EETTTTEEESSHHHHHHHHH CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                        +C  Cgk+F++   L  H+r
  PDK_30s655093g008 124 TCAVCGKTFPSLKALYGHLR 143
                        6*****************98 PP
2zf-C2H220.51.3e-06287309123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        y+C +CgksFs++  L  H+ +H
  PDK_30s655093g008 287 YRCRICGKSFSTHQALGGHMASH 309
                        9*******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.56E-11123145No hitNo description
SMARTSM003550.093123145IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328123150IPR007087Zinc finger, C2H2
PfamPF139129.6E-9125147IPR007087Zinc finger, C2H2
PROSITE patternPS000280125145IPR007087Zinc finger, C2H2
SuperFamilySSF576673.56E-11282309No hitNo description
Gene3DG3DSA:3.30.160.607.1E-6282312IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.3E-9286311IPR007087Zinc finger, C2H2
SMARTSM003555.1E-4287309IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.133287314IPR007087Zinc finger, C2H2
PROSITE patternPS000280289309IPR007087Zinc finger, C2H2
PfamPF139122.4E-10349372IPR007087Zinc finger, C2H2
SMARTSM003550.46349371IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280351371IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MGAHPVDGRS YYQSEAPALG PEDGSVAANG KLAKTRFRIR LNKCEKAGEQ NEEAAREEAV  60
SSDRSLRRAS DGDMRARHVS NGELADDRDE HTESQNVADG TVVEDPGSSE SKNGGDNVAE  120
GPPTCAVCGK TFPSLKALYG HLRCHRQRDY RGAHRPPEAK KKRKKKKKIQ IGAGSSSNKA  180
LTAKRGHKGI LDLKDPEANA AEILLQMSRS NNLRPTPCNI GRGKRKEMDE DAMHSENADG  240
IEGECTGVEA SSSQSVFEGE VKKEKKKKIK DLESVHESSP PTRDRRYRCR ICGKSFSTHQ  300
ALGGHMASHN KSKNNSEEGD GTEDSNLAHA DEELADSNTL VPGTATTEHR CKTCQAAFPT  360
GQALGGHKRK HWNGPAMASA TVAPPPPAPS SESVKEELSI LENSSYSGTH EHITSYPPRG  420
WKIKEIILKV FMRAF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159167KKKRKKKKK
2160164KKRKK
3161167KRKKKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017699489.10.0zinc finger protein ZAT9-like
RefseqXP_026662348.10.0zinc finger protein ZAT9-like
RefseqXP_026662349.10.0zinc finger protein ZAT9-like
TrEMBLA0A2H3ZSX30.0A0A2H3ZSX3_PHODC; zinc finger protein ZAT9-like
STRINGXP_008805550.11e-131(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1943657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.18e-17C2H2 family protein