PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s65509194g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C3H
Protein Properties Length: 708aa    MW: 75386.6 Da    PI: 7.1056
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s65509194g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.87.7e-08289309526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C++f++ GtC++Gd C +aHg
  PDK_30s65509194g001 289 PCPDFRK-GTCRRGDMCEYAHG 309
                          8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.06E-1351135IPR020683Ankyrin repeat-containing domain
PfamPF127964.0E-953124IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.06953148IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00345383IPR002110Ankyrin repeat
CDDcd002042.65E-1353133No hitNo description
Gene3DG3DSA:1.25.40.201.4E-1554147IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00590122IPR002110Ankyrin repeat
PROSITE profilePS5008811.96890125IPR002110Ankyrin repeat
SMARTSM003563.1E-6284310IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4288311IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-5289309IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.911289311IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-4317347IPR000571Zinc finger, CCCH-type
SMARTSM0035663319342IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MCGGPERIKA FSEETRSSSL ARSMSHLTVV TDDCFSIGMW YGRKKGSNQM VLERRTPLMV  60
AATYGSLDVL RLILSLSVVD VNRGCGRGPD STTALHCAAS GGSANAVDAV KILLAAGADP  120
NAVDANGHRP ADVIVVPPKL RAVKIALEEV LGGSSGVSGG EQLRLQHVLH VTTTTAAAAS  180
SSNSNSPPLS SSPDEDGSPS SDSTSSPMNA KFADLPPSAI SEKKEYPVDP SLPDIKNSVY  240
ATDEFRMYSF KVRPCSRAYS HDWTECPFVH PGENARRRDP RKYHYSCVPC PDFRKGTCRR  300
GDMCEYAHGV FECWLHPAQY RTRLCKDGTS CSRRVCFFAH TNEELRPLYM STGSAVPSPW  360
SSASAAMEMA AAMGLMPGSP SSVSVMSPFT PPISPSANSM AHSSLAWPQP NVPTLHLPGS  420
NLHSSRLRSS LSARDMPMDD LSMMPDFDAQ QVLNDLCYSR LGSAAANHSA RSKTLTPSNL  480
DELFSAEISS PRTAILNQFQ QQQQSLLSPI STNVFSPKAV DHQQLPGQSS LLQASLGISS  540
PGRMSPRAIE PLSPMSSRLA AFAQREKQQQ TLRSLSSRDL GSGSSPIAGS PVNSSWSKWA  600
SPSGTLDWGV NGEELGRLRR SSSFELRSGG EEPDLSWVHS LVKESPPEKL VTAAATSVGP  660
PVSLPAGGGG GAGGAGEASN ANAQIDGHDQ AAVLSAWLEQ MQLDQMVA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008778438.10.0zinc finger CCCH domain-containing protein 24-like
SwissprotQ10EL10.0C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A2H3X5180.0A0A2H3X518_PHODC; zinc finger CCCH domain-containing protein 24-like
STRINGXP_008778438.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]