PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s65509103g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 424aa    MW: 48191.5 Da    PI: 4.5501
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s65509103g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.72.8e-5061361129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgk..rknratksgyWkat 86 
                          lppGfrFhPtd elv++yLk+kv+gk++++ e+i+e+++yk+ PwdLp k +++++++ewyfF++rd+ky++g+  ++nrat+ gyWk+t
  PDK_30s65509103g002   6 LPPGFRFHPTDVELVQYYLKRKVTGKSFRF-EAISEIELYKFAPWDLPdKsCLRSKDQEWYFFCPRDRKYPNGSktKTNRATDIGYWKTT 94 
                          79**************************99.89**************96358888999*************86533899*********** PP

                  NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          gkd++v++ k+++vg+kktL+f+ g+ap+g +tdWvm eyrle
  PDK_30s65509103g002  95 GKDRPVIH-KSRTVGMKKTLIFHVGKAPRGDRTDWVMYEYRLE 136
                          ********.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-584158IPR003441NAC domain
PROSITE profilePS5100555.666158IPR003441NAC domain
PfamPF023654.1E-277135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MGKTLLPPGF RFHPTDVELV QYYLKRKVTG KSFRFEAISE IELYKFAPWD LPDKSCLRSK  60
DQEWYFFCPR DRKYPNGSKT KTNRATDIGY WKTTGKDRPV IHKSRTVGMK KTLIFHVGKA  120
PRGDRTDWVM YEYRLEDNEL LNAGYSLDAY VLCKIFQKSG PGPKIGEQYG APFNEEDWED  180
DTIIDNAISF PCAPFPKPLD DQLVLLEPIC QQSVFTGVCE VSSTSDLPDA DGMLLDHLPE  240
FLIGSPPQSE NANNKISSSA VVDKNINEVC GVETGIYDEL EDLCAQGGIN YNVNYSGTIN  300
NEYELQPVLT ELGCEQYVEL NDIYSLWEGD PSELVVPSDL FARYPLVQDP SSPNLNDMHV  360
QTFSISVTTA MNDPLPVGTG MINDQSAVFL EVHVLHFLTV SAFVISMCFL IKYFRFHTHW  420
YYFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-52615915169Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010911657.10.0protein CUP-SHAPED COTYLEDON 3 isoform X1
TrEMBLA0A2H3ZFJ40.0A0A2H3ZFJ4_PHODC; NAC domain-containing protein 82-like
STRINGXP_008813044.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47313664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.12e-82NAC domain containing protein 2