PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1201411g005
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 240aa    MW: 27307.1 Da    PI: 8.6917
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1201411g005genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61e-161461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEde+l+  ++ +G g+W++ ++  g+ R++k+c++rw +yl
  PDK_30s1201411g005 14 KGAWTKEEDERLIAHIRVHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                        79******************************99************97 PP
2Myb_DNA-binding621.3e-1967111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg++T+eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++
  PDK_30s1201411g005  67 RGNFTEEEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNHWNTH 111
                         89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-24564IPR009057Homeodomain-like
PROSITE profilePS5129416.845961IPR017930Myb domain
SMARTSM007173.2E-131363IPR001005SANT/Myb domain
SuperFamilySSF466895.64E-3013108IPR009057Homeodomain-like
PfamPF002491.7E-141461IPR001005SANT/Myb domain
CDDcd001674.04E-101661No hitNo description
PROSITE profilePS5129430.32562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-2865116IPR009057Homeodomain-like
SMARTSM007173.6E-1866114IPR001005SANT/Myb domain
PfamPF002491.4E-1767111IPR001005SANT/Myb domain
CDDcd001671.41E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010224Biological Processresponse to UV-B
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0090379Biological Processsecondary cell wall biogenesis involved in seed trichome differentiation
GO:1903086Biological Processnegative regulation of sinapate ester biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDERLIAHIR VHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT DNEIKNHWNT HIKRKLLNRG  120
VDPATHRPIN EHASNVTISF ERREEKGSAA VRHEERSSSE ESSAWPRGRL QQQQLKCPDL  180
NLELCIGPPL QQESLEPVKR EGTTLCFSCS LGSQKSNECK CNGFLCLSTG VLDYRSLQMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-311311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00479DAPTransfer from AT4G38620Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008808405.11e-177myb-related protein Hv1-like
SwissprotP200261e-112MYB1_HORVU; Myb-related protein Hv1
TrEMBLA0A2H3Z4W11e-175A0A2H3Z4W1_PHODC; myb-related protein Hv1-like
STRINGXP_008808405.11e-176(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-98myb domain protein 4