PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1198251g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NAC

Protein Properties

Length: 199aa MW: 22207.1 Da PI: 5.0071

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1198251g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	115.8	4.4e-36	4	121	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGf+F P+deelvv++L +k++ +++ ++i+++++ +v+PwdL+ k+ ++ ++wyfFs+r + nr+ +gyW g d++ PDK_30s1198251g001 4 LPPGFQFVPSDEELVVHFLYPKASLLPCHP-DIIPSLNLRHVDPWDLDGKALQGGNQWYFFSQRIQ--------NRVSPNGYWTPIGVDEP 85 79***********************999.99**********977778899**9855........8999********* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v s ++++vg+kktLvfy g+ap g+kt+W+m ey+l PDK_30s1198251g001 86 VAS-SDKVVGMKKTLVFYVGEAPCGVKTNWMMIEYHL 121 .8999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.23E-47	3	161	IPR003441	NAC domain
PROSITE profile	PS51005	42.426	4	163	IPR003441	NAC domain
Pfam	PF02365	1.7E-21	5	121	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0043067	Biological Process	regulation of programmed cell death
GO:0048367	Biological Process	shoot system development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MGGLPPGFQF VPSDEELVVH FLYPKASLLP CHPDIIPSLN LRHVDPWDLD GKALQGGNQW 60 YFFSQRIQNR VSPNGYWTPI GVDEPVASSD KVVGMKKTLV FYVGEAPCGV KTNWMMIEYH 120 LLDGSTNCSS SGSRTHSNRR SSKKRAHQRV VSDNWIICRV YEASCDSVAS SLSDDTELSC 180 LDEVFLSLDD LDEISLPNL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-37	4	167	17	169	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-37	4	167	17	169	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-37	4	167	17	169	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-37	4	167	17	169	NO APICAL MERISTEM PROTEIN
3swm_A	9e-37	4	167	20	172	NAC domain-containing protein 19
3swm_B	9e-37	4	167	20	172	NAC domain-containing protein 19
3swm_C	9e-37	4	167	20	172	NAC domain-containing protein 19
3swm_D	9e-37	4	167	20	172	NAC domain-containing protein 19
3swp_A	9e-37	4	167	20	172	NAC domain-containing protein 19
3swp_B	9e-37	4	167	20	172	NAC domain-containing protein 19
3swp_C	9e-37	4	167	20	172	NAC domain-containing protein 19
3swp_D	9e-37	4	167	20	172	NAC domain-containing protein 19
4dul_A	9e-37	4	167	17	169	NAC domain-containing protein 19
4dul_B	9e-37	4	167	17	169	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010911499.1	1e-118	NAC domain-containing protein 104
Swissprot	Q8GWK6	4e-67	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A0A9FYS5	6e-83	A0A0A9FYS5_ARUDO; Uncharacterized protein
STRING	MLOC_15681.2	2e-81	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3667	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	2e-69	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]