PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1194391g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HD-ZIP
Protein Properties Length: 837aa    MW: 91915.1 Da    PI: 6.0057
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1194391g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.97.2e-182582457
                        -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                          ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  PDK_30s1194391g003 25 YVRYTAEQVEALERVYGECPKPSSVRRQQLIRECpilaNIEPKQIKVWFQNRRCREKQ 82
                        5789****************************************************97 PP
2START154.21.1e-481623702205
                         HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS
               START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 
                         +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+  +g a+r++g+v  +++   +e+l+d++ W +++++ e+      g  g+
  PDK_30s1194391g003 162 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSIGIVAISHCTNGVAARVCGLVSLEPT-KIAEILKDRPSWFRDCRSLEVFTMFPAGngGT 251
                         7899******************************************************.7777777777***********999999999** PP

                         EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
               START  91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                         ++l +++++a+++l+p Rdf+++Ry+  l++g++v++++S++     p     +++vRae+lpSg+li+p+++g+s v++v+h dl+++ +
  PDK_30s1194391g003 252 IELVYMQTYAPTTLAPaRDFWTLRYTIGLEDGSLVVCERSLSGSGGGPHataAHQFVRAEMLPSGYLIRPCDGGGSIVHIVDHLDLEAWNV 342
                         *******************************************99999999999************************************* PP

                         HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
               START 178 hwllrslvksglaegaktwvatlqrqce 205
                         +++lr+l++s+++ ++k+++a+l++ ++
  PDK_30s1194391g003 343 PEVLRPLYESSRIVAQKMTTAALRHVRQ 370
                         ***********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.1591983IPR001356Homeobox domain
SMARTSM003891.7E-142187IPR001356Homeobox domain
CDDcd000862.59E-152484No hitNo description
SuperFamilySSF466895.56E-162487IPR009057Homeodomain-like
PfamPF000461.9E-152582IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.6E-182682IPR009057Homeodomain-like
CDDcd146861.41E-676114No hitNo description
PROSITE profilePS5084825.755152380IPR002913START domain
CDDcd088752.35E-71156372No hitNo description
SMARTSM002346.4E-39161371IPR002913START domain
SuperFamilySSF559613.3E-35161373No hitNo description
Gene3DG3DSA:3.30.530.204.7E-20161347IPR023393START-like domain
PfamPF018529.7E-47162370IPR002913START domain
PfamPF086702.1E-50694836IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
MATTMAVRSG GGGGLEKEPM DTGKYVRYTA EQVEALERVY GECPKPSSVR RQQLIRECPI  60
LANIEPKQIK VWFQNRRCRE KQRKEASRLQ AVNRKLTAMN KLLMEENERL QKQVTQLVHE  120
NAYMRQQLQN ASLANDTSCE SVVTTPQNAL RDASNPAGLL SIAEETLAEF LSKATGTAVD  180
WVQMPGMKPG PDSIGIVAIS HCTNGVAARV CGLVSLEPTK IAEILKDRPS WFRDCRSLEV  240
FTMFPAGNGG TIELVYMQTY APTTLAPARD FWTLRYTIGL EDGSLVVCER SLSGSGGGPH  300
ATAAHQFVRA EMLPSGYLIR PCDGGGSIVH IVDHLDLEAW NVPEVLRPLY ESSRIVAQKM  360
TTAALRHVRQ IAQEMNGEVV YTLGRQPAVL RTFSQRLSRG FNDAINGFVD DGWSLMGGDG  420
VEDVVVATNT SKKISAQANS ANAFSVSGGV ICAKASMLLQ NVPPALLVRF LREHRSEWAD  480
YNIDAYSAAS LKTGSCSFPG LRPLRFSGSQ IIMPLAHTVE NEEFLEVVRL EGQAVAQDEA  540
ILSRDVHLLQ LCSGIDENAV GACFQLVFAL IDELFPDDAP LLPSGFRVIP LDTKSEGLSS  600
SRTLDLASSL EVGSATNRCA GDTPTIDHNL RSVLTIAFQF PYEVNLQDSV AAMARQYVRS  660
IVSSVQRVSL ALSPSRPGLH VGQRLLPGSP EAVTVARWIC QSYSYYLGME LLRYDGETGE  720
SLLKMLWHHQ DAILCCSFKM QPIFTFANQA GLDMLETTLV ALQDISLDKI FDESGRKALC  780
SEFAKLMEQG YAYLPAGVCL SGMGRHVSYE QAIAWKVPGE DSNVHCLAFC FMNWSFI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008791541.10.0homeobox-leucine zipper protein HOX9-like isoform X1
SwissprotA2Z8L40.0HOX9_ORYSI; Homeobox-leucine zipper protein HOX9
TrEMBLA0A2H3Y0E50.0A0A2H3Y0E5_PHODC; homeobox-leucine zipper protein HOX9-like isoform X1
STRINGXP_008791541.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein