PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1188121g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GRAS
Protein Properties Length: 518aa    MW: 57283 Da    PI: 5.1413
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1188121g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS351.91e-1071375111374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalklfse 86 
                         lv+lLl+cAeav  +d++la ++L r+ + a+p gd++qR+ ++f+ +L++rl+    ++    + + + +++      +e++  ++l+++
  PDK_30s1188121g002 137 LVHLLLACAEAVGCRDARLAASTLHRIWTFANPCGDSLQRVSFCFAMGLQSRLSL-LRNIGTNGSLTGAVTTDgplvtREEKMEGFRLLYQ 226
                         68***************************************************97.44444443333333333456557788888999*** PP

                GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                         ++P++ f++++aN+aI +a+ g++ +HiiD+++++ lQWp+L+++L sR+egpp  lRiTg+ s+  ++  ele+  + +++ A++lg+p+
  PDK_30s1188121g002 227 TTPYIAFGFMAANEAICQAARGKDYLHIIDLGMEHTLQWPSLIRTLVSRSEGPPkLLRITGICSAMFSDLPELESSMRAITNEANALGMPV 317
                         **************************************************9998689*******8877*********************** PP

                GRAS 177 efnvlvakrledl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                         ef++l +     l +l++L++++gE++ Vn++++lh+ ++es  + +   ++L ++k+l+P +v+vveq+a+hn++ Fl+rfle+l+yysa
  PDK_30s1188121g002 318 EFRALEEAPSPLLpNLDQLELRQGEVVFVNSIMHLHKYVRESRGSLK---AILTAIKKLNPALVTVVEQDANHNGPFFLARFLESLHYYSA 405
                         ****96665555569************************87776666...9**************************************** PP

                GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357
                         +fdslea+lpr+s +r k+E+  +++ei+n+va eg +r++rhe++ +Wr++l++aGF+ v l++  ++qa++ll+ ++ +gy++ +e+g+
  PDK_30s1188121g002 406 IFDSLEASLPRASTQRLKIEKCHFAEEIRNIVAYEGCDRVARHERADQWRRQLGRAGFQVVGLKS--TSQARMLLSVYGCEGYTLASEKGC 494
                         ***************************************************************87..58********************** PP

                GRAS 358 lvlgWkdrpLvsvSaWr 374
                         l+lgW++rp++++SaW+
  PDK_30s1188121g002 495 LLLGWNGRPIMWASAWQ 511
                         ****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.243111493IPR005202Transcription factor GRAS
PfamPF035143.6E-105137511IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MNGWISSSST PLQDGTLTQG TAIRRFCAAR MDQERDQGEW DDAFFDVEAW SSSRDSSSPP  60
CSWASFEETS FIDSVINTSL CDQANEDATP VQDLRMYEVA HESLDIVGNS VDYSGVPLVP  120
SGVVDVEARG INEGLELVHL LLACAEAVGC RDARLAASTL HRIWTFANPC GDSLQRVSFC  180
FAMGLQSRLS LLRNIGTNGS LTGAVTTDGP LVTREEKMEG FRLLYQTTPY IAFGFMAANE  240
AICQAARGKD YLHIIDLGME HTLQWPSLIR TLVSRSEGPP KLLRITGICS AMFSDLPELE  300
SSMRAITNEA NALGMPVEFR ALEEAPSPLL PNLDQLELRQ GEVVFVNSIM HLHKYVRESR  360
GSLKAILTAI KKLNPALVTV VEQDANHNGP FFLARFLESL HYYSAIFDSL EASLPRASTQ  420
RLKIEKCHFA EEIRNIVAYE GCDRVARHER ADQWRRQLGR AGFQVVGLKS TSQARMLLSV  480
YGCEGYTLAS EKGCLLLGWN GRPIMWASAW QVNPLSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-5713351015378Protein SCARECROW
5b3h_A2e-5713351014377Protein SCARECROW
5b3h_D2e-5713351014377Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008795820.10.0DELLA protein GAI1-like
TrEMBLA0A2H3YAB00.0A0A2H3YAB0_PHODC; DELLA protein GAI1-like
STRINGXP_008795820.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5086422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-76RGA-like 2