PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1180271g006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | GRAS | ||||||||
Protein Properties | Length: 211aa MW: 23099.6 Da PI: 10.4325 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 111.1 | 1.4e-34 | 9 | 113 | 33 | 140 |
GRAS 33 pdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGl 123 ++g + ++a yf+ AL r+++ +s+ +++ + + s +e+ ++ f+evsP+lkf+h++aNqaIlea++g +rvH+iDf++++Gl PDK_30s1180271g006 9 NTGVGIGKVAGYFVDALCWRIYSPCSSSSSSSVSVAGS---AAEQEILYHHFYEVSPYLKFAHFMANQAILEAFDGYNRVHVIDFNLMHGL 96 5677889****************666665555444444...6777788899**************************************** PP GRAS 124 QWpaLlqaLasRpegpp 140 QWpaL+qaLa R++g PDK_30s1180271g006 97 QWPALIQALALRAGGRR 113 ************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 22.848 | 1 | 211 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.0E-32 | 9 | 113 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MRVVLTRVNT GVGIGKVAGY FVDALCWRIY SPCSSSSSSS VSVAGSAAEQ EILYHHFYEV 60 SPYLKFAHFM ANQAILEAFD GYNRVHVIDF NLMHGLQWPA LIQALALRAG GRRQRRACDK 120 ERGENGPPVK ESRALVPQLS RATVLVTGWT SHMRKGIGNL TGGPAILPSF PGWVDQSRLF 180 EIILPSETAA ILRTRLKMSA TRANRPAGSS S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 5e-17 | 8 | 115 | 34 | 141 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008809331.2 | 2e-71 | DELLA protein RHT-1-like | ||||
TrEMBL | A0A2H3Z6Z7 | 5e-70 | A0A2H3Z6Z7_PHODC; DELLA protein RHT-1-like | ||||
STRING | XP_008809331.1 | 4e-71 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14920.1 | 8e-22 | GRAS family protein |